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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10250-RA through 18771 annotations produced 1 hits



myogenic determination (nau):

Annotation Number : CG10250
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002922
Gbrowse : chr3R:19538533-19544079 (-) // 100.0 //
Probeset : 1627734_at
Accessions : protein= NP_001163702; /// NP_476650;, nucleotide= NM_001170231; /// NM_057302;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0
FlyMine data for FBgn0002922.
Homophila reports that CG10250 is a close match (3e-19) to human gene MYF6 (NP_002460), a gene associated with Becker muscular dystrophy modifier, 310200 (3);Myopathy, centronuclear, 160150 (3).
BioGrid reports that CG10250 interacts with CG5102 .
TRiP has 1 RNAi stocks for FBgn0002922 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002922 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.20Down
Head13 12 of 4 1.10None
Eye3 10 of 4 0.29Down
Thoracicoabdominal ganglion11 10 of 4 0.90None
Salivary gland9 50 of 4 0.73None
Crop6 20 of 4 0.50None
Midgut18 22 of 4 1.50None
Tubule7 10 of 4 0.60Down
Hindgut3 10 of 4 0.30Down
Heart2 00 of 4 0.18Down
Fat body6 30 of 4 0.53Down
Ovary2 00 of 4 0.20Down
Testis2 00 of 4 0.20Down
Male accessory glands6 20 of 4 0.50None
Virgin spermatheca5 10 of 4 0.40Down
Mated spermatheca6 21 of 4 0.52None
Adult carcass43 24 of 4 3.50Up
Larval CNS2 10 of 4 0.18Down
Larval Salivary gland1 00 of 4 0.09Down
Larval midgut20 21 of 4 1.57None
Larval tubule5 20 of 4 0.40Down
Larval hindgut7 10 of 4 0.62Down
Larval fat body5 20 of 4 0.50Down
Larval trachea6 30 of 4 0.53Down
Larval carcass22 34 of 4 1.78Up
S2 cells (growing)236 14 of 418.61Up
Whole fly12 12 of 4

Looking for CG10250-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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