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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10251-RA through 18771 annotations produced 1 hits



portabella (CG10251):

Annotation Number : CG10251
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043005
Gbrowse : chr3R:19522443-19524602 (-) // 100.0 //
Probeset : 1623284_at
Accessions : protein= NP_001097887;, nucleotide= NM_001104417;
Interpro : 0005276 // vesicular hydrogen:amino acid antiporter activity // inferred from sequence or structural similarity /// 0005
FlyMine data for FBgn0043005.
BioGrid reports that CG10251 interacts with CG18349 .
VDRC has 3 RNAi stocks for FBgn0043005 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain86 ± 34 of 423.60Up
Head17 ± 04 of 4 4.70Up
Eye4 ± 11 of 4 1.29None
Thoracicoabdominal ganglion23 ± 14 of 4 6.40Up
Salivary gland5 ± 20 of 4 1.43None
Crop2 ± 00 of 4 0.60None
Midgut5 ± 11 of 4 1.60None
Tubule2 ± 00 of 4 0.70Down
Hindgut5 ± 01 of 4 1.50None
Heart2 ± 00 of 4 0.80None
Fat body6 ± 10 of 4 1.86None
Ovary2 ± 10 of 4 0.60None
Testis13 ± 14 of 4 3.60Up
Male accessory glands1 ± 10 of 4 0.50None
Virgin spermatheca5 ± 10 of 4 1.48None
Mated spermatheca2 ± 10 of 4 0.72None
Adult carcass3 ± 10 of 4 0.90None
Larval CNS61 ± 84 of 416.77Up
Larval Salivary gland8 ± 12 of 4 2.20None
Larval midgut5 ± 10 of 4 1.49None
Larval tubule0 ± 00 of 4 0.20None
Larval hindgut3 ± 01 of 4 0.95None
Larval fat body4 ± 10 of 4 1.30None
Larval trachea5 ± 22 of 4 1.50None
Larval carcass4 ± 10 of 4 1.32None
S2 cells (growing)2 ± 01 of 4 0.73None
Whole fly3 ± 10 of 4

Looking for CG10251-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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