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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10255-RA through 18771 annotations produced 1 hits

Lap1 (Lap1):

Annotation Number : CG10255
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033984
Gbrowse : chr2R:10823180-10827807 (+) // 100.0 //
Probeset : 1639189_at
Accessions : protein= NP_611007;, nucleotide= NM_137163;
Pathway : 0005912 // adherens junction // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0033984.
Homophila reports that CG10255 is a close match (2e-13) to human gene ALS;IGFALS (NP_004961), a gene associated with Acid-labile subunit, deficiency of (3).
BioGrid reports that CG10255 interacts with CG9254 CG13623 CG2233 CG3056 CG3195 Dmel CG34407 .
TRiP has 1 RNAi stocks for FBgn0033984 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033984 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain169 74 of 4 2.20Up
Head57 14 of 4 0.80Down
Eye45 14 of 4 0.60Down
Thoracicoabdominal ganglion112 24 of 4 1.50Up
Salivary gland44 14 of 4 0.58Down
Crop124 44 of 4 1.60Up
Midgut32 14 of 4 0.40Down
Tubule80 24 of 4 1.10None
Hindgut58 44 of 4 0.80Down
Heart30 24 of 4 0.40Down
Fat body22 44 of 4 0.30Down
Ovary178 24 of 4 2.40Up
Testis27 34 of 4 0.40Down
Male accessory glands30 44 of 4 0.40Down
Virgin spermatheca23 34 of 4 0.31Down
Mated spermatheca26 14 of 4 0.34Down
Adult carcass33 14 of 4 0.40Down
Larval CNS118 124 of 4 1.56Up
Larval Salivary gland33 34 of 4 0.44Down
Larval midgut42 34 of 4 0.56Down
Larval tubule603 574 of 4 8.00Up
Larval hindgut86 34 of 4 1.14None
Larval fat body48 24 of 4 0.60Down
Larval trachea84 104 of 4 1.11None
Larval carcass56 54 of 4 0.75Down
S2 cells (growing)125 44 of 4 1.66Up
Whole fly75 34 of 4

Looking for CG10255-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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