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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10257-RA through 18771 annotations produced 1 hits


Annotation Number : CG10257
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033985
Gbrowse : chr2R:10830115-10831971 (+) // 100.0 //
Probeset : 1631110_at
Accessions : protein= NP_611008;, nucleotide= NM_137164;
FlyMine data for FBgn0033985.
BioGrid reports that CG10257 interacts with CG9242 .
VDRC has 3 RNAi stocks for FBgn0033985 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain113 74 of 410.20Up
Head61 44 of 4 5.60Up
Eye275 284 of 424.96Up
Thoracicoabdominal ganglion196 34 of 417.80Up
Salivary gland6 20 of 4 0.58None
Crop4 20 of 4 0.40None
Midgut7 10 of 4 0.60None
Tubule4 00 of 4 0.40Down
Hindgut9 10 of 4 0.80None
Heart2 01 of 4 0.24Down
Fat body2 30 of 4 0.25Down
Ovary1 00 of 4 0.20Down
Testis7 10 of 4 0.70None
Male accessory glands6 10 of 4 0.60None
Virgin spermatheca2 00 of 4 0.18Down
Mated spermatheca2 10 of 4 0.19Down
Adult carcass15 10 of 4 1.40None
Larval CNS11 31 of 4 1.02None
Larval Salivary gland4 20 of 4 0.42None
Larval midgut5 20 of 4 0.50None
Larval tubule178 104 of 416.20Up
Larval hindgut2 00 of 4 0.22Down
Larval fat body1 00 of 4 0.10Down
Larval trachea5 41 of 4 0.50None
Larval carcass7 20 of 4 0.69None
S2 cells (growing)4 10 of 4 0.37Down
Whole fly11 00 of 4

Looking for CG10257-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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