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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10263-RA through 18771 annotations produced 1 hits


Annotation Number : CG10263
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032812
Gbrowse : chr2L:19580608-19582497 (-) // 100.0 //
Probeset : 1633440_a_at
Accessions : protein= NP_609993; /// NP_724217; /// NP_788075;, nucleotide= NM_136149; /// NM_165312; /// NM_176061;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0032812.
BDGP gene expression has embryonic in situ data for CG10263: 4 pix of staining in 1 body parts.
BioGrid reports that CG10263 interacts with CG10480 CG1104 CG3496 CG5380 CG6378 CG10267 CG10387 CG1041 CG10523 CG10527 CG10710 CG10948 CG11326 CG11354 CG11763 CG12256 CG12432 CG12548 CG12586 CG1314 CG13281 CG13311 CG13630 CG14030 CG14667 CG14696 CG14805 CG14957 CG1502 CG15141 CG15167 CG15865 CG16947 CG17025 CG17380 CG17440 CG17510 CG1792 CG18135 CG1856 CG2116 CG2261 CG2865 CG3021 CG31721 CG31869 CG31999 CG32264 CG32369 CG32425 CG33017 CG3308 CG3689 CG4216 CG4778 CG4821 CG5017 CG5576 CG5659 CG5709 CG6459 CG7109 CG7626 CG7763 CG7787 CG7963 CG7997 CG8120 CG8198 CG8301 CG9031 CG9060 CG9572 CG9784 CG6156 .

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 74 of 4 1.20None
Head60 14 of 4 0.70Down
Eye51 24 of 4 0.61Down
Thoracicoabdominal ganglion75 44 of 4 0.90None
Salivary gland93 54 of 4 1.11None
Crop59 44 of 4 0.70Down
Midgut42 14 of 4 0.50Down
Tubule66 34 of 4 0.80Down
Hindgut50 24 of 4 0.60Down
Heart35 44 of 4 0.43Down
Fat body48 82 of 4 0.58Down
Ovary146 54 of 4 1.70Up
Testis39 24 of 4 0.50Down
Male accessory glands141 54 of 4 1.70Up
Virgin spermatheca65 44 of 4 0.77Down
Mated spermatheca80 34 of 4 0.95None
Adult carcass55 14 of 4 0.70Down
Larval CNS116 64 of 4 1.38Up
Larval Salivary gland80 64 of 4 0.95None
Larval midgut51 34 of 4 0.61Down
Larval tubule63 24 of 4 0.70Down
Larval hindgut70 14 of 4 0.83Down
Larval fat body64 64 of 4 0.80Down
Larval trachea71 84 of 4 0.85None
Larval carcass69 44 of 4 0.83None
S2 cells (growing)138 54 of 4 1.64Up
Whole fly84 44 of 4

Looking for CG10263-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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