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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10267-RA through 18771 annotations produced 1 hits


Annotation Number : CG10267
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037446
Gbrowse : chr3R:2282875-2284545 (+) // 100.0 //
Probeset : 1635205_at
Accessions : protein= NP_649657;, nucleotide= NM_141400;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037446.
BDGP gene expression has embryonic in situ data for CG10267: 25 pix of staining in 7 body parts.
Homophila reports that CG10267 is a close match (2e-11) to human gene FKLF;FKLF1;KLF11;MODY7;TIEG2 (NP_003588), a gene associated with Maturity-onset diabetes of the young, type VII, 610508 (3).
BioGrid reports that CG10267 interacts with CG15436 CG4957 CG5362 CG10267 CG12379 CG1391 CG14540 CG2033 CG5229 CG7266 CG7386 CG7417 CG9318 CG33275 .
TRiP has 2 RNAi stocks for FBgn0037446 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037446 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain214 124 of 4 1.60Up
Head99 34 of 4 0.70Down
Eye147 44 of 4 1.07None
Thoracicoabdominal ganglion200 54 of 4 1.50Up
Salivary gland136 94 of 4 0.99None
Crop114 54 of 4 0.80None
Midgut97 64 of 4 0.70Down
Tubule178 44 of 4 1.30Up
Hindgut119 54 of 4 0.90None
Heart84 54 of 4 0.61Down
Fat body60 64 of 4 0.44Down
Ovary305 124 of 4 2.20Up
Testis325 24 of 4 2.40Up
Male accessory glands108 84 of 4 0.80None
Virgin spermatheca114 24 of 4 0.83None
Mated spermatheca108 44 of 4 0.78Down
Adult carcass79 44 of 4 0.60Down
Larval CNS293 104 of 4 2.13Up
Larval Salivary gland192 274 of 4 1.39None
Larval midgut69 14 of 4 0.50Down
Larval tubule103 24 of 4 0.80Down
Larval hindgut104 64 of 4 0.76Down
Larval fat body114 214 of 4 0.80None
Larval trachea177 174 of 4 1.29Up
Larval carcass106 24 of 4 0.77Down
S2 cells (growing)244 84 of 4 1.77Up
Whole fly138 94 of 4

Looking for CG10267-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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