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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10269-RA through 18771 annotations produced 1 hits



Zinc finger AT-hook protein (D19A):

Annotation Number : CG10269
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022935
Gbrowse : chr3L:6178934-6182201 (-) // 100.0 //
Probeset : 1640054_at
Accessions : protein= NP_477304;, nucleotide= NM_057956;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0022935.
Homophila reports that CG10269 is a close match (8e-11) to human gene EGR2;KROX20 (NP_000390), a gene associated with Charcot-Marie-Tooth disease, type 1D, 607678 (3);Dejerine-Sottas neuropathy, 145900 (3);Neuropathy, congenital hypomyelinating, 1, 605253 (3).
BioGrid reports that CG10269 interacts with CG5050 CG9797 CG13838 CG1422 CG15032 CG15436 CG15602 CG17097 CG17666 CG2998 CG31140 CG3186 CG32584 CG3629 CG3851 CG4148 CG4394 CG5848 CG7184 CG7386 CG7626 CG7824 CG8701 CG8854 CG8857 CG8863 CG9426 .
TRiP has 1 RNAi stocks for FBgn0022935 available for purchase.
VDRC has 3 RNAi stocks for FBgn0022935 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain156 ± 24 of 4 2.10Up
Head66 ± 14 of 4 0.90None
Eye81 ± 44 of 4 1.08None
Thoracicoabdominal ganglion122 ± 34 of 4 1.60Up
Salivary gland138 ± 64 of 4 1.86Up
Crop57 ± 24 of 4 0.80Down
Midgut42 ± 34 of 4 0.60Down
Tubule44 ± 14 of 4 0.60Down
Hindgut67 ± 24 of 4 0.90None
Heart40 ± 34 of 4 0.54Down
Fat body44 ± 64 of 4 0.59Down
Ovary207 ± 54 of 4 2.80Up
Testis29 ± 14 of 4 0.40Down
Male accessory glands83 ± 24 of 4 1.10None
Virgin spermatheca76 ± 44 of 4 1.02None
Mated spermatheca77 ± 44 of 4 1.03None
Adult carcass54 ± 44 of 4 0.70Down
Larval CNS168 ± 134 of 4 2.26Up
Larval Salivary gland81 ± 44 of 4 1.09None
Larval midgut35 ± 24 of 4 0.48Down
Larval tubule47 ± 24 of 4 0.60Down
Larval hindgut69 ± 44 of 4 0.93None
Larval fat body35 ± 44 of 4 0.50Down
Larval trachea130 ± 214 of 4 1.74Up
Larval carcass60 ± 64 of 4 0.81None
S2 cells (growing)81 ± 44 of 4 1.08None
Whole fly74 ± 54 of 4

Looking for CG10269-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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