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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10281-RA through 18771 annotations produced 1 hits



large subunit of transcription factor 5 (TfIIFalpha):

Annotation Number : CG10281
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010282
Gbrowse : chr3R:2206180-2208333 (+) // 100.0 //
Probeset : 1640495_at
Accessions : protein= NP_524246;, nucleotide= NM_079522;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor acti
FlyMine data for FBgn0010282.
BioGrid reports that CG10281 interacts with CG5258 .
TRiP has 1 RNAi stocks for FBgn0010282 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010282 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain153 44 of 4 0.70Down
Head118 44 of 4 0.50Down
Eye92 44 of 4 0.39Down
Thoracicoabdominal ganglion136 24 of 4 0.60Down
Salivary gland271 144 of 4 1.16None
Crop140 54 of 4 0.60Down
Midgut139 44 of 4 0.60Down
Tubule109 84 of 4 0.50Down
Hindgut135 34 of 4 0.60Down
Heart90 24 of 4 0.39Down
Fat body132 104 of 4 0.56Down
Ovary429 64 of 4 1.80Up
Testis179 54 of 4 0.80Down
Male accessory glands315 174 of 4 1.30Up
Virgin spermatheca91 74 of 4 0.39Down
Mated spermatheca112 104 of 4 0.48Down
Adult carcass129 24 of 4 0.60Down
Larval CNS285 144 of 4 1.22Up
Larval Salivary gland493 144 of 4 2.11Up
Larval midgut152 34 of 4 0.65Down
Larval tubule137 44 of 4 0.60Down
Larval hindgut192 24 of 4 0.82None
Larval fat body203 124 of 4 0.90None
Larval trachea212 254 of 4 0.91None
Larval carcass239 64 of 4 1.02None
S2 cells (growing)231 74 of 4 0.99None
Whole fly234 144 of 4

Looking for CG10281-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime