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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10287-RA through 18771 annotations produced 1 hits



Gasp (Gasp):

Annotation Number : CG10287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026077
Gbrowse : chr3R:1918720-1926609 (-) // 100.0 //
Probeset : 1626893_at
Accessions : protein= NP_001097694; /// NP_649611;, nucleotide= NM_001104224; /// NM_141354;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008061 // chitin binding // inferred from electron
FlyMine data for FBgn0026077.
BDGP gene expression has embryonic in situ data for Gasp: 58 pix of staining in 10 body parts.
BioGrid reports that CG10287 interacts with CG8573 CG13811 .
VDRC has 1 RNAi stocks for FBgn0026077 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 04 of 4 0.10Down
Head271 84 of 4 2.90Up
Eye1005 564 of 410.68Up
Thoracicoabdominal ganglion6 01 of 4 0.10Down
Salivary gland129 94 of 4 1.38None
Crop832 324 of 4 8.80Up
Midgut69 44 of 4 0.70None
Tubule63 64 of 4 0.70Down
Hindgut332 124 of 4 3.50Up
Heart86 124 of 4 0.92None
Fat body110 124 of 4 1.17None
Ovary5 03 of 4 0.10Down
Testis60 44 of 4 0.60None
Male accessory glands36 24 of 4 0.40Down
Virgin spermatheca68 24 of 4 0.72None
Mated spermatheca105 34 of 4 1.12None
Adult carcass168 24 of 4 1.80Up
Larval CNS121 204 of 4 1.29None
Larval Salivary gland465 354 of 4 4.94Up
Larval midgut254 114 of 4 2.70Up
Larval tubule16 34 of 4 0.20Down
Larval hindgut1031 1414 of 410.95Up
Larval fat body12 22 of 4 0.10Down
Larval trachea4079 2344 of 443.33Up
Larval carcass3797 1694 of 440.33Up
S2 cells (growing)3 00 of 4 0.03Down
Whole fly94 124 of 4

Looking for CG10287-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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