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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10289-RA through 18771 annotations produced 1 hits



(CG10289):

Annotation Number : CG10289
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035688
Gbrowse : chr3L:6162668-6166966 (-) // 99.48 //
Probeset : 1641548_at
Accessions : protein= NP_648033;, nucleotide= NM_139776;
FlyMine data for FBgn0035688.
BioGrid reports that CG10289 interacts with CG10654 CG16708 CG3919 CG4617 CG9181 .
TRiP has 2 RNAi stocks for FBgn0035688 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035688 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain177 44 of 4 1.70Up
Head80 34 of 4 0.80Down
Eye93 64 of 4 0.89None
Thoracicoabdominal ganglion143 54 of 4 1.40Up
Salivary gland140 114 of 4 1.33None
Crop135 74 of 4 1.30Up
Midgut97 24 of 4 0.90None
Tubule215 114 of 4 2.00Up
Hindgut116 54 of 4 1.10None
Heart98 54 of 4 0.93None
Fat body85 14 of 4 0.81Down
Ovary209 54 of 4 2.00Up
Testis45 24 of 4 0.40Down
Male accessory glands110 104 of 4 1.00None
Virgin spermatheca95 44 of 4 0.91None
Mated spermatheca104 64 of 4 0.99None
Adult carcass76 94 of 4 0.70None
Larval CNS212 124 of 4 2.01Up
Larval Salivary gland156 84 of 4 1.49Up
Larval midgut96 54 of 4 0.91None
Larval tubule202 64 of 4 1.90Up
Larval hindgut164 74 of 4 1.56Up
Larval fat body91 54 of 4 0.90None
Larval trachea177 84 of 4 1.68Up
Larval carcass130 134 of 4 1.23None
S2 cells (growing)147 34 of 4 1.40Up
Whole fly105 34 of 4

Looking for CG10289-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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