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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10301-RA through 18771 annotations produced 1 hits



(CG10301):

Annotation Number : CG10301
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039106
Gbrowse : chr3R:19535738-19536981 (+) // 100.0 //
Probeset : 1631913_at
Accessions : protein= NP_651173;, nucleotide= NM_142916;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039106.
BioGrid reports that CG10301 interacts with CG1314 CG1633 .
VDRC has 1 RNAi stocks for FBgn0039106 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.70None
Head0 ± 00 of 4 0.20None
Eye2 ± 00 of 4 0.94None
Thoracicoabdominal ganglion0 ± 00 of 4 0.20None
Salivary gland4 ± 20 of 4 1.62None
Crop0 ± 00 of 4 0.30None
Midgut10 ± 22 of 4 3.60Up
Tubule18 ± 13 of 4 6.10Up
Hindgut5 ± 20 of 4 2.00None
Heart1 ± 10 of 4 0.49None
Fat body2 ± 20 of 4 0.75None
Ovary1 ± 00 of 4 0.60None
Testis0 ± 00 of 4 0.30None
Male accessory glands2 ± 10 of 4 0.90None
Virgin spermatheca1 ± 00 of 4 0.58None
Mated spermatheca0 ± 00 of 4 0.24None
Adult carcass4 ± 10 of 4 1.40None
Larval CNS0 ± 00 of 4 0.29None
Larval Salivary gland1 ± 00 of 4 0.49None
Larval midgut9 ± 10 of 4 3.31Up
Larval tubule17 ± 13 of 4 6.00Up
Larval hindgut1 ± 10 of 4 0.64None
Larval fat body3 ± 10 of 4 1.30None
Larval trachea1 ± 20 of 4 0.65None
Larval carcass3 ± 10 of 4 1.20None
S2 cells (growing)2 ± 00 of 4 0.92None
Whole fly3 ± 10 of 4

Looking for CG10301-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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