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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10327-RD through 18771 annotations produced 1 hits



TBPH (TBPH):

Annotation Number : CG10327
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025790
Gbrowse : chr2R:19746851-19750104 (-) // 100.0 //
Probeset : 1635758_s_at
Accessions : protein= NP_001163280; /// NP_001163281; /// NP_477399; /// NP_477400; /// NP_599145; /// NP_726373;, nucleotide= NM_001169809; /// NM_001169810; /// NM_058051; /// NM_058052; /// NM_134318; /// NM_166628;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0025790.
BDGP gene expression has embryonic in situ data for TBPH: 24 pix of staining in 17 body parts.
Homophila reports that CG10327 is a close match (3e-94) to human gene ALS10;TARDBP;TDP43 (NP_031401), a gene associated with Amyotrophic lateral sclerosis 10, 612069 (3).
BioGrid reports that CG10327 interacts with CG5890 CG9025 CG9083 CG10327 CG10650 CG10961 CG11138 CG11154 CG11164 CG12645 CG1298 CG12992 CG13084 CG13114 CG13502 CG13992 CG15105 CG1637 CG16747 CG16892 CG17221 CG41099 CG1836 CG2174 CG2199 CG2962 CG2967 CG3052 CG3074 CG31973 CG32019 CG3510 CG3692 CG4303 CG4328 CG4799 CG4998 CG5214 CG5468 CG5642 CG5791 CG6159 CG6688 CG6910 CG6933 CG7111 CG7123 CG7660 CG8216 CG8580 CG8640 CG8745 CG8907 CG8947 CG9036 CG9092 CG9277 CG9745 CG9765 CG9936 CG15365 CG4897 CG6287 CG31762 CG6246 .
TRiP has 2 RNAi stocks for FBgn0025790 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025790 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain289 84 of 4 4.10Up
Head97 74 of 4 1.40Up
Eye150 104 of 4 2.11Up
Thoracicoabdominal ganglion240 64 of 4 3.40Up
Salivary gland99 104 of 4 1.40None
Crop103 54 of 4 1.50Up
Midgut58 34 of 4 0.80None
Tubule55 14 of 4 0.80Down
Hindgut69 34 of 4 1.00None
Heart54 34 of 4 0.77Down
Fat body52 34 of 4 0.73Down
Ovary107 44 of 4 1.50Up
Testis132 44 of 4 1.90Up
Male accessory glands92 14 of 4 1.30Up
Virgin spermatheca100 74 of 4 1.41Up
Mated spermatheca110 84 of 4 1.55Up
Adult carcass51 34 of 4 0.70Down
Larval CNS311 284 of 4 4.39Up
Larval Salivary gland108 24 of 4 1.53Up
Larval midgut67 44 of 4 0.94None
Larval tubule92 34 of 4 1.30Up
Larval hindgut86 34 of 4 1.22None
Larval fat body70 44 of 4 1.00None
Larval trachea77 104 of 4 1.09None
Larval carcass74 44 of 4 1.04None
S2 cells (growing)140 54 of 4 1.97Up
Whole fly71 54 of 4

Looking for CG10327-RD. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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