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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10328-RA through 18771 annotations produced 1 hits



no-on transient A gene (nonA-l):

Annotation Number : CG10328
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015520
Gbrowse : chr3R:12465928-12468541 (+) // 100.0 //
Probeset : 1623722_at
Accessions : protein= NP_536740;, nucleotide= NM_080492;
Pathway : via spliceosome // inferred from sequence or structural similarity"
Interpro : 0005681 // spliceosomal complex // inferred from sequence or structural similarity
FlyMine data for FBgn0015520.
BioGrid reports that CG10328 interacts with CG10869 CG6425 CG5376 .
VDRC has 1 RNAi stocks for FBgn0015520 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain249 ± 54 of 4 1.30Up
Head96 ± 104 of 4 0.50Down
Eye84 ± 34 of 4 0.44Down
Thoracicoabdominal ganglion235 ± 84 of 4 1.20Up
Salivary gland80 ± 44 of 4 0.42Down
Crop66 ± 54 of 4 0.30Down
Midgut31 ± 34 of 4 0.20Down
Tubule37 ± 04 of 4 0.20Down
Hindgut84 ± 34 of 4 0.40Down
Heart46 ± 44 of 4 0.24Down
Fat body19 ± 54 of 4 0.10Down
Ovary529 ± 54 of 4 2.70Up
Testis369 ± 104 of 4 1.90Up
Male accessory glands231 ± 114 of 4 1.20None
Virgin spermatheca78 ± 54 of 4 0.41Down
Mated spermatheca79 ± 104 of 4 0.41Down
Adult carcass25 ± 24 of 4 0.10Down
Larval CNS473 ± 344 of 4 2.44Up
Larval Salivary gland60 ± 74 of 4 0.31Down
Larval midgut29 ± 14 of 4 0.15Down
Larval tubule59 ± 44 of 4 0.30Down
Larval hindgut71 ± 34 of 4 0.37Down
Larval fat body81 ± 234 of 4 0.40Down
Larval trachea60 ± 74 of 4 0.31Down
Larval carcass51 ± 24 of 4 0.26Down
S2 cells (growing)81 ± 24 of 4 0.42Down
Whole fly193 ± 124 of 4

Looking for CG10328-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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