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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10333-RA through 18771 annotations produced 1 hits



(CG10333):

Annotation Number : CG10333
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032690
Gbrowse : chr2L:18606832-18609558 (+) // 100.0 //
Probeset : 1633736_at
Accessions : protein= NP_609888;, nucleotide= NM_136044;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity"
FlyMine data for FBgn0032690.
TRiP has 1 RNAi stocks for FBgn0032690 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032690 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain184 ± 14 of 4 1.50Up
Head112 ± 34 of 4 0.90None
Eye175 ± 34 of 4 1.39Up
Thoracicoabdominal ganglion189 ± 74 of 4 1.50Up
Salivary gland122 ± 94 of 4 0.97None
Crop116 ± 14 of 4 0.90None
Midgut115 ± 34 of 4 0.90None
Tubule191 ± 04 of 4 1.50Up
Hindgut121 ± 24 of 4 1.00None
Heart83 ± 34 of 4 0.67Down
Fat body102 ± 34 of 4 0.81None
Ovary221 ± 124 of 4 1.80Up
Testis55 ± 14 of 4 0.40Down
Male accessory glands97 ± 54 of 4 0.80None
Virgin spermatheca130 ± 54 of 4 1.03None
Mated spermatheca120 ± 24 of 4 0.96None
Adult carcass92 ± 24 of 4 0.70None
Larval CNS341 ± 144 of 4 2.71Up
Larval Salivary gland157 ± 34 of 4 1.25None
Larval midgut97 ± 34 of 4 0.78None
Larval tubule150 ± 94 of 4 1.20None
Larval hindgut119 ± 44 of 4 0.95None
Larval fat body118 ± 84 of 4 0.90None
Larval trachea148 ± 144 of 4 1.18None
Larval carcass131 ± 44 of 4 1.04None
S2 cells (growing)225 ± 44 of 4 1.79Up
Whole fly126 ± 134 of 4

Looking for CG10333-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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