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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10334-RF through 18771 annotations produced 1 hits



spitz (spi):

Annotation Number : CG10334
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005672
Gbrowse : chr2L:19567898-19577324 (-) // 100.0 //
Probeset : 1627453_s_at
Accessions : protein= NP_001027281; /// NP_476909; /// NP_599118; /// NP_599119; /// NP_599120; /// NP_599121; /// NP_599122;, nucleotide= NM_001032110; /// NM_057561; /// NM_134291; /// NM_134292; /// NM_134293; /// NM_134294; /// NM_134295;
Pathway : open tracheal system // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from
Interpro : open tracheal system // traceable author statement /// 0048149 // behavioral response to ethanol // inferred from mutan
FlyMine data for FBgn0005672.
BDGP gene expression has embryonic in situ data for spi: 13 pix of staining in 14 body parts.
BioGrid reports that CG10334 interacts with CG13272 CG10325 CG11579 CG9885 CG6824 CG3978 CG9375 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG3830 CG10491 CG10491 CG10491 CG10491 CG10491 CG5123 CG4889 CG6464 CG7873 CG1004 CG1004 CG1004 CG1004 CG18412 CG18497 CG1921 CG1921 .
TRiP has 2 RNAi stocks for FBgn0005672 available for purchase.
VDRC has 3 RNAi stocks for FBgn0005672 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain928 ± 74 of 4 4.20Up
Head508 ± 194 of 4 2.30Up
Eye535 ± 84 of 4 2.43Up
Thoracicoabdominal ganglion1203 ± 144 of 4 5.50Up
Salivary gland548 ± 284 of 4 2.49Up
Crop402 ± 144 of 4 1.80Up
Midgut262 ± 74 of 4 1.20None
Tubule298 ± 64 of 4 1.40Up
Hindgut286 ± 74 of 4 1.30Up
Heart262 ± 124 of 4 1.19None
Fat body142 ± 124 of 4 0.65Down
Ovary275 ± 44 of 4 1.30None
Testis169 ± 34 of 4 0.80None
Male accessory glands183 ± 114 of 4 0.80None
Virgin spermatheca250 ± 124 of 4 1.14None
Mated spermatheca257 ± 264 of 4 1.17None
Adult carcass205 ± 224 of 4 0.90None
Larval CNS1011 ± 914 of 4 4.59Up
Larval Salivary gland106 ± 64 of 4 0.48Down
Larval midgut149 ± 94 of 4 0.68Down
Larval tubule222 ± 114 of 4 1.00None
Larval hindgut198 ± 84 of 4 0.90None
Larval fat body836 ± 644 of 4 3.80Up
Larval trachea315 ± 374 of 4 1.43Up
Larval carcass173 ± 274 of 4 0.79None
S2 cells (growing)1852 ± 134 of 4 8.41Up
Whole fly220 ± 204 of 4

Looking for CG10334-RF. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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