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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10337-RA through 18771 annotations produced 1 hits



(CG10337):

Annotation Number : CG10337
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032805
Gbrowse : chr2L:19545273-19546914 (-) // 100.0 //
Probeset : 1629121_at
Accessions : protein= NP_609986;, nucleotide= NM_136142;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0032805.
VDRC has 2 RNAi stocks for FBgn0032805 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 04 of 4 0.20Down
Head26 ± 24 of 4 0.60Down
Eye24 ± 14 of 4 0.59Down
Thoracicoabdominal ganglion11 ± 14 of 4 0.30Down
Salivary gland52 ± 44 of 4 1.28None
Crop48 ± 24 of 4 1.20None
Midgut154 ± 74 of 4 3.80Up
Tubule171 ± 144 of 4 4.20Up
Hindgut80 ± 14 of 4 2.00Up
Heart64 ± 114 of 4 1.59None
Fat body75 ± 194 of 4 1.86Up
Ovary46 ± 24 of 4 1.20None
Testis17 ± 14 of 4 0.40Down
Male accessory glands32 ± 34 of 4 0.80None
Virgin spermatheca58 ± 64 of 4 1.43None
Mated spermatheca70 ± 34 of 4 1.73Up
Adult carcass40 ± 64 of 4 1.00None
Larval CNS28 ± 44 of 4 0.71None
Larval Salivary gland76 ± 74 of 4 1.88Up
Larval midgut248 ± 124 of 4 6.09Up
Larval tubule162 ± 94 of 4 4.00Up
Larval hindgut99 ± 74 of 4 2.44Up
Larval fat body78 ± 54 of 4 1.90Up
Larval trachea84 ± 64 of 4 2.07Up
Larval carcass89 ± 124 of 4 2.20Up
S2 cells (growing)74 ± 54 of 4 1.83Up
Whole fly40 ± 44 of 4

Looking for CG10337-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime