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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10343-RA through 18771 annotations produced 1 hits



(CG10343):

Annotation Number : CG10343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032703
Gbrowse : chr2L:18703466-18704454 (+) // 100.0 //
Probeset : 1626236_at
Accessions : protein= NP_609900;, nucleotide= NM_136056;
FlyMine data for FBgn0032703.
BDGP gene expression has embryonic in situ data for CG10343: 2 pix of staining in 1 body parts.
BioGrid reports that CG10343 interacts with Dmel CG34365 .
VDRC has 2 RNAi stocks for FBgn0032703 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 ± 34 of 4 0.60Down
Head102 ± 44 of 4 0.60Down
Eye146 ± 84 of 4 0.82None
Thoracicoabdominal ganglion99 ± 24 of 4 0.60Down
Salivary gland160 ± 124 of 4 0.90None
Crop127 ± 34 of 4 0.70Down
Midgut161 ± 44 of 4 0.90None
Tubule242 ± 514 of 4 1.40None
Hindgut105 ± 44 of 4 0.60Down
Heart124 ± 94 of 4 0.70Down
Fat body116 ± 104 of 4 0.65Down
Ovary224 ± 54 of 4 1.30Up
Testis262 ± 14 of 4 1.50Up
Male accessory glands128 ± 84 of 4 0.70Down
Virgin spermatheca109 ± 04 of 4 0.62Down
Mated spermatheca108 ± 44 of 4 0.61Down
Adult carcass105 ± 64 of 4 0.60Down
Larval CNS129 ± 74 of 4 0.73Down
Larval Salivary gland167 ± 114 of 4 0.94None
Larval midgut108 ± 44 of 4 0.61Down
Larval tubule181 ± 24 of 4 1.00None
Larval hindgut107 ± 54 of 4 0.60Down
Larval fat body115 ± 44 of 4 0.60Down
Larval trachea168 ± 254 of 4 0.95None
Larval carcass119 ± 74 of 4 0.67Down
S2 cells (growing)129 ± 24 of 4 0.72Down
Whole fly178 ± 114 of 4

Looking for CG10343-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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