Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10344-RB through 18771 annotations produced 2 hits



(CG10344):

Annotation Number : CG10344
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034729
Gbrowse : chr2R:18313255-18314459 (-) // 99.65 //
Probeset : 1622933_at
Accessions : protein= NP_611671; /// NP_726201;, nucleotide= NM_137827; /// NM_166534;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0034729.
BDGP gene expression has embryonic in situ data for CG10344: 4 pix of staining in 1 body parts.
BioGrid reports that CG10344 interacts with CG12012 CG1746 CG18816 CG30160 .
TRiP has 2 RNAi stocks for FBgn0034729 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034729 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 14 of 4 0.30Down
Head10 ± 14 of 4 0.30Down
Eye14 ± 14 of 4 0.37Down
Thoracicoabdominal ganglion9 ± 13 of 4 0.20Down
Salivary gland40 ± 33 of 4 1.06None
Crop15 ± 14 of 4 0.40Down
Midgut42 ± 04 of 4 1.10None
Tubule39 ± 34 of 4 1.00None
Hindgut27 ± 14 of 4 0.70Down
Heart21 ± 14 of 4 0.57Down
Fat body23 ± 14 of 4 0.61Down
Ovary78 ± 24 of 4 2.10Up
Testis148 ± 104 of 4 3.90Up
Male accessory glands19 ± 24 of 4 0.50Down
Virgin spermatheca9 ± 04 of 4 0.24Down
Mated spermatheca11 ± 12 of 4 0.31Down
Adult carcass17 ± 20 of 4 0.50Down
Larval CNS8 ± 14 of 4 0.24Down
Larval Salivary gland25 ± 24 of 4 0.68Down
Larval midgut28 ± 24 of 4 0.76Down
Larval tubule20 ± 04 of 4 0.50Down
Larval hindgut38 ± 34 of 4 1.01None
Larval fat body30 ± 103 of 4 0.80None
Larval trachea18 ± 14 of 4 0.49Down
Larval carcass10 ± 01 of 4 0.28Down
S2 cells (growing)16 ± 14 of 4 0.44Down
Whole fly37 ± 24 of 4



(CG10344):

Annotation Number : CG10344
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034729
Gbrowse : chr2R:18313236-18314470 (-) // 100.0 //
Probeset : 1634822_a_at
Accessions : protein= NP_611671; /// NP_726201;, nucleotide= NM_137827; /// NM_166534;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0034729.
BDGP gene expression has embryonic in situ data for CG10344: 4 pix of staining in 1 body parts.
BioGrid reports that CG10344 interacts with CG12012 CG1746 CG18816 CG30160 .
TRiP has 2 RNAi stocks for FBgn0034729 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034729 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 14 of 4 0.40Down
Head32 ± 24 of 4 0.50Down
Eye31 ± 14 of 4 0.44Down
Thoracicoabdominal ganglion37 ± 34 of 4 0.50Down
Salivary gland102 ± 54 of 4 1.45Up
Crop29 ± 34 of 4 0.40Down
Midgut69 ± 04 of 4 1.00None
Tubule70 ± 44 of 4 1.00None
Hindgut53 ± 24 of 4 0.80None
Heart44 ± 34 of 4 0.63Down
Fat body52 ± 164 of 4 0.74None
Ovary118 ± 24 of 4 1.70Up
Testis199 ± 64 of 4 2.80Up
Male accessory glands61 ± 44 of 4 0.90None
Virgin spermatheca44 ± 43 of 4 0.62Down
Mated spermatheca47 ± 44 of 4 0.67Down
Adult carcass58 ± 64 of 4 0.80None
Larval CNS24 ± 64 of 4 0.35Down
Larval Salivary gland53 ± 14 of 4 0.76None
Larval midgut60 ± 24 of 4 0.85None
Larval tubule41 ± 44 of 4 0.60Down
Larval hindgut69 ± 24 of 4 0.98None
Larval fat body42 ± 84 of 4 0.60Down
Larval trachea41 ± 54 of 4 0.58Down
Larval carcass47 ± 34 of 4 0.67Down
S2 cells (growing)49 ± 24 of 4 0.70None
Whole fly70 ± 74 of 4

Looking for CG10344-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime