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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10353-RA through 18771 annotations produced 1 hits



(CG10353):

Annotation Number : CG10353
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030349
Gbrowse : chrX:11771768-11781192 (-) // 100.0 //
Probeset : 1630814_s_at
Accessions : protein= NP_572762; /// NP_727578;, nucleotide= NM_132534; /// NM_167312;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030349.
Homophila reports that CG10353 is a close match (1e-135) to human gene GDD1;TMEM16E (NP_998764), a gene associated with Gnthodiaphyseal dysplasia, 166260 (3).
BioGrid reports that CG10353 interacts with CG13296 CG11092 CG1216 CG32100 CG4893 .
VDRC has 2 RNAi stocks for FBgn0030349 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain407 ± 134 of 4 2.80Up
Head279 ± 104 of 4 1.90Up
Eye496 ± 394 of 4 3.45Up
Thoracicoabdominal ganglion275 ± 64 of 4 1.90Up
Salivary gland306 ± 84 of 4 2.13Up
Crop2437 ± 354 of 416.90Up
Midgut186 ± 54 of 4 1.30Up
Tubule125 ± 184 of 4 0.90None
Hindgut724 ± 294 of 4 5.00Up
Heart286 ± 254 of 4 1.99Up
Fat body219 ± 144 of 4 1.52Up
Ovary93 ± 24 of 4 0.70Down
Testis60 ± 34 of 4 0.40Down
Male accessory glands207 ± 74 of 4 1.40Up
Virgin spermatheca152 ± 84 of 4 1.06None
Mated spermatheca146 ± 94 of 4 1.02None
Adult carcass247 ± 134 of 4 1.70Up
Larval CNS240 ± 134 of 4 1.67Up
Larval Salivary gland457 ± 94 of 4 3.17Up
Larval midgut351 ± 384 of 4 2.44Up
Larval tubule197 ± 84 of 4 1.40Up
Larval hindgut463 ± 374 of 4 3.22Up
Larval fat body109 ± 114 of 4 0.80None
Larval trachea520 ± 534 of 4 3.61Up
Larval carcass685 ± 484 of 4 4.76Up
S2 cells (growing)202 ± 14 of 4 1.40Up
Whole fly144 ± 84 of 4

Looking for CG10353-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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