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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10357-RA through 18771 annotations produced 1 hits


Annotation Number : CG10357
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035453
Gbrowse : chr3L:3615393-3617827 (+) // 100.0 //
Probeset : 1637690_at
Accessions : protein= NP_647821;, nucleotide= NM_139564;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // infe
FlyMine data for FBgn0035453.
Homophila reports that CG10357 is a close match (3e-18) to human gene HDLCQ12;HL;LIPC;LIPH (NP_000227), a gene associated with Hepatic lipase deficiency (3);[High density lipoprotein cholesterol level QTL 12] (3);{Diabetes mellitus, noninsulin-dependent}, 125853 (3).
BioGrid reports that CG10357 interacts with CG11247 .
TRiP has 1 RNAi stocks for FBgn0035453 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035453 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20None
Head123 94 of 416.00Up
Eye36 173 of 4 4.73None
Thoracicoabdominal ganglion2 10 of 4 0.30None
Salivary gland1 00 of 4 0.21None
Crop0 00 of 4 0.10None
Midgut1 00 of 4 0.20None
Tubule1 00 of 4 0.20Down
Hindgut2 10 of 4 0.30None
Heart0 00 of 4 0.10None
Fat body3 20 of 4 0.49None
Ovary0 00 of 4 0.10None
Testis2 11 of 4 0.30None
Male accessory glands3 00 of 4 0.40None
Virgin spermatheca1 00 of 4 0.14None
Mated spermatheca0 00 of 4 0.09Down
Adult carcass5 31 of 4 0.70None
Larval CNS0 00 of 4 0.08Down
Larval Salivary gland1 00 of 4 0.18None
Larval midgut4 10 of 4 0.60None
Larval tubule2 10 of 4 0.30None
Larval hindgut1 10 of 4 0.24None
Larval fat body4 11 of 4 0.50None
Larval trachea1 10 of 4 0.19None
Larval carcass0 00 of 4 0.07Down
S2 cells (growing)0 00 of 4 0.05Down
Whole fly7 23 of 4

Looking for CG10357-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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