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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10360-RA through 18771 annotations produced 1 hits



refractaire (ref(2)P):

Annotation Number : CG10360
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003231
Gbrowse : chr2L:19542445-19545548 (+) // 100.0 //
Probeset : 1627212_at
Accessions : protein= NP_001014491; /// NP_476700;, nucleotide= NM_001014491; /// NM_057352;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0003231.
BDGP gene expression has embryonic in situ data for ref(2)P: 40 pix of staining in 14 body parts.
BioGrid reports that CG10360 interacts with CG17320 CG18290 CG2678 CG3210 CG6998 CG33197 CG4086 Dmel CG33970 .
TRiP has 2 RNAi stocks for FBgn0003231 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003231 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain833 114 of 4 0.90None
Head865 204 of 4 0.90None
Eye436 134 of 4 0.47Down
Thoracicoabdominal ganglion800 84 of 4 0.90None
Salivary gland1433 604 of 4 1.56Up
Crop1498 164 of 4 1.60Up
Midgut2109 134 of 4 2.30Up
Tubule2230 584 of 4 2.40Up
Hindgut1278 104 of 4 1.40Up
Heart3528 1274 of 4 3.83Up
Fat body3423 3874 of 4 3.72Up
Ovary748 144 of 4 0.80Down
Testis446 84 of 4 0.50Down
Male accessory glands861 394 of 4 0.90None
Virgin spermatheca976 524 of 4 1.06None
Mated spermatheca971 604 of 4 1.06None
Adult carcass2316 1574 of 4 2.50Up
Larval CNS273 124 of 4 0.30Down
Larval Salivary gland598 794 of 4 0.65Down
Larval midgut2325 814 of 4 2.53Up
Larval tubule2085 474 of 4 2.30Up
Larval hindgut1090 1174 of 4 1.18None
Larval fat body864 444 of 4 0.90None
Larval trachea593 674 of 4 0.64Down
Larval carcass525 554 of 4 0.57Down
S2 cells (growing)737 164 of 4 0.80Down
Whole fly920 484 of 4

Looking for CG10360-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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