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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10361-RA through 18771 annotations produced 1 hits


Annotation Number : CG10361
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036208
Gbrowse : chr3L:11792043-11793956 (-) // 100.0 //
Probeset : 1624454_at
Accessions : protein= NP_648509;, nucleotide= NM_140252;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferre
FlyMine data for FBgn0036208.
BDGP gene expression has embryonic in situ data for CG10361: 16 pix of staining in 9 body parts.
Homophila reports that CG10361 is a close match (1e-28) to human gene HSAN;HSN1;LBC1;SPT1;SPTLC1 (NP_006406), a gene associated with Neuropathy, hereditary sensory and autonomic, type 1, 162400 (3).
VDRC has 1 RNAi stocks for FBgn0036208 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 24 of 4 2.20Up
Head158 144 of 4 5.30Up
Eye58 114 of 4 1.96None
Thoracicoabdominal ganglion71 64 of 4 2.40Up
Salivary gland5 10 of 4 0.17Down
Crop15 30 of 4 0.50Down
Midgut8 20 of 4 0.30Down
Tubule4 10 of 4 0.20Down
Hindgut17 23 of 4 0.60None
Heart122 174 of 4 4.09Up
Fat body340 1214 of 411.34Up
Ovary1 00 of 4 0.00Down
Testis4 10 of 4 0.10Down
Male accessory glands14 10 of 4 0.50Down
Virgin spermatheca518 374 of 417.25Up
Mated spermatheca362 544 of 412.07Up
Adult carcass150 104 of 4 5.00Up
Larval CNS370 614 of 412.33Up
Larval Salivary gland3 20 of 4 0.11Down
Larval midgut15 41 of 4 0.53None
Larval tubule3 10 of 4 0.10Down
Larval hindgut61 54 of 4 2.05Up
Larval fat body1 00 of 4 0.10Down
Larval trachea9 151 of 4 0.31None
Larval carcass268 764 of 4 8.95None
S2 cells (growing)2 00 of 4 0.07Down
Whole fly30 44 of 4

Looking for CG10361-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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