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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10362-RA through 18771 annotations produced 1 hits



(CG10362):

Annotation Number : CG10362
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030358
Gbrowse : chrX:11820442-11824883 (-) // 100.0 //
Probeset : 1630106_at
Accessions : protein= NP_572771;, nucleotide= NM_132543;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0019992 // diacylglycerol binding // inferred from
FlyMine data for FBgn0030358.
BDGP gene expression has embryonic in situ data for CG10362: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0030358 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain245 ± 104 of 414.20Up
Head109 ± 44 of 4 6.40Up
Eye203 ± 214 of 411.81Up
Thoracicoabdominal ganglion297 ± 84 of 417.30Up
Salivary gland2 ± 10 of 4 0.16Down
Crop7 ± 10 of 4 0.40Down
Midgut2 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.20Down
Heart7 ± 11 of 4 0.42Down
Fat body6 ± 41 of 4 0.36Down
Ovary1 ± 00 of 4 0.10Down
Testis5 ± 10 of 4 0.30Down
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca6 ± 20 of 4 0.39Down
Mated spermatheca4 ± 11 of 4 0.28Down
Adult carcass8 ± 30 of 4 0.50Down
Larval CNS115 ± 84 of 4 6.68Up
Larval Salivary gland1 ± 10 of 4 0.11Down
Larval midgut6 ± 10 of 4 0.36Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.11Down
Larval fat body4 ± 20 of 4 0.30Down
Larval trachea6 ± 61 of 4 0.38Down
Larval carcass3 ± 00 of 4 0.22Down
S2 cells (growing)3 ± 10 of 4 0.20Down
Whole fly17 ± 14 of 4

Looking for CG10362-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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