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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10371-RB through 18771 annotations produced 1 hits



MKP-like (Plip):

Annotation Number : CG10371
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039111
Gbrowse : chr3R:19584062-19585328 (+) // 99.56 //
Probeset : 1627660_a_at
Accessions : protein= NP_651180; /// NP_732901;, nucleotide= NM_142923; /// NM_170090;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0039111.
BDGP gene expression has embryonic in situ data for CG10371: 16 pix of staining in 8 body parts.
BioGrid reports that CG10371 interacts with CG15781 CG9326 .
TRiP has 1 RNAi stocks for FBgn0039111 available for purchase.
VDRC has 4 RNAi stocks for FBgn0039111 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain146 ± 44 of 4 0.70Down
Head163 ± 54 of 4 0.80None
Eye106 ± 44 of 4 0.54Down
Thoracicoabdominal ganglion133 ± 34 of 4 0.70Down
Salivary gland170 ± 104 of 4 0.86None
Crop182 ± 74 of 4 0.90None
Midgut233 ± 94 of 4 1.20None
Tubule182 ± 134 of 4 0.90None
Hindgut180 ± 24 of 4 0.90None
Heart224 ± 124 of 4 1.14None
Fat body232 ± 44 of 4 1.18None
Ovary264 ± 104 of 4 1.30Up
Testis176 ± 114 of 4 0.90None
Male accessory glands145 ± 24 of 4 0.70Down
Virgin spermatheca261 ± 94 of 4 1.33Up
Mated spermatheca248 ± 64 of 4 1.26Up
Adult carcass203 ± 84 of 4 1.00None
Larval CNS152 ± 54 of 4 0.77None
Larval Salivary gland172 ± 84 of 4 0.87None
Larval midgut138 ± 94 of 4 0.70Down
Larval tubule167 ± 94 of 4 0.80None
Larval hindgut202 ± 54 of 4 1.02None
Larval fat body120 ± 44 of 4 0.60Down
Larval trachea161 ± 94 of 4 0.82None
Larval carcass256 ± 204 of 4 1.30None
S2 cells (growing)258 ± 44 of 4 1.31Up
Whole fly197 ± 154 of 4

Looking for CG10371-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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