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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10374-RA through 18771 annotations produced 1 hits



Lipid storage droplet-1 (Lsd-1):

Annotation Number : CG10374
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039114
Gbrowse : chr3R:19589578-19592324 (+) // 100.0 //
Probeset : 1636510_a_at
Accessions : protein= NP_651183; /// NP_732904; /// NP_732905;, nucleotide= NM_142926; /// NM_170092; /// NM_170093;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039114.
BDGP gene expression has embryonic in situ data for Lsdp1: 25 pix of staining in 4 body parts.
BioGrid reports that CG10374 interacts with CG14453 .
VDRC has 5 RNAi stocks for FBgn0039114 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 24 of 4 0.10Down
Head970 344 of 4 2.50Up
Eye458 714 of 4 1.20None
Thoracicoabdominal ganglion32 73 of 4 0.10Down
Salivary gland16 20 of 4 0.04Down
Crop1834 494 of 4 4.80Up
Midgut586 404 of 4 1.50Up
Tubule79 144 of 4 0.20Down
Hindgut1094 344 of 4 2.90Up
Heart2341 1634 of 4 6.11Up
Fat body3292 3304 of 4 8.59Up
Ovary22 24 of 4 0.10Down
Testis14 12 of 4 0.00Down
Male accessory glands30 10 of 4 0.10Down
Virgin spermatheca2131 264 of 4 5.56Up
Mated spermatheca1971 1154 of 4 5.14Up
Adult carcass1582 464 of 4 4.10Up
Larval CNS27 24 of 4 0.07Down
Larval Salivary gland90 64 of 4 0.24Down
Larval midgut467 804 of 4 1.22None
Larval tubule480 314 of 4 1.30None
Larval hindgut113 84 of 4 0.29Down
Larval fat body7139 7564 of 418.60Up
Larval trachea181 524 of 4 0.47Down
Larval carcass47 74 of 4 0.12Down
S2 cells (growing)91 24 of 4 0.24Down
Whole fly383 374 of 4

Looking for CG10374-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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