FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10375-RA through 18771 annotations produced 1 hits

(CG10375):

Annotation Number : CG10375
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039116
Gbrowse : chr3R:19593433-19594704 (+) // 100.0 //
Probeset : 1628615_at
Accessions : protein= NP_001163704; /// NP_651185;, nucleotide= NM_001170233; /// NM_142928;
Interpro : 0031072 // heat shock protein binding // inferred from electronic annotation
FlyMine data for FBgn0039116.
BioGrid reports that CG10375 interacts with CG7264 .
VDRC has 2 RNAi stocks for FBgn0039116 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	225 ± 4	4 of 4	1.70	Up
Head	141 ± 7	4 of 4	1.10	None
Eye	144 ± 4	4 of 4	1.10	None
Thoracicoabdominal ganglion	141 ± 3	4 of 4	1.10	None
Salivary gland	103 ± 6	4 of 4	0.78	Down
Crop	127 ± 3	4 of 4	1.00	None
Midgut	104 ± 3	4 of 4	0.80	Down
Tubule	136 ± 6	4 of 4	1.00	None
Hindgut	107 ± 3	4 of 4	0.80	Down
Heart	103 ± 6	4 of 4	0.79	Down
Fat body	82 ± 11	4 of 4	0.62	Down
Ovary	178 ± 3	4 of 4	1.40	Up
Testis	104 ± 7	4 of 4	0.80	Down
Male accessory glands	120 ± 2	4 of 4	0.90	None
Virgin spermatheca	74 ± 1	4 of 4	0.56	Down
Mated spermatheca	84 ± 6	4 of 4	0.64	Down
Adult carcass	96 ± 2	4 of 4	0.70	Down
Larval CNS	260 ± 6	4 of 4	1.97	Up
Larval Salivary gland	200 ± 5	4 of 4	1.52	Up
Larval midgut	62 ± 2	4 of 4	0.47	Down
Larval tubule	121 ± 5	4 of 4	0.90	None
Larval hindgut	96 ± 1	4 of 4	0.73	Down
Larval fat body	88 ± 2	4 of 4	0.70	Down
Larval trachea	191 ± 10	4 of 4	1.45	Up
Larval carcass	125 ± 4	4 of 4	0.95	None
S2 cells (growing)	216 ± 5	4 of 4	1.64	Up
Whole fly	131 ± 6	4 of 4

Looking for CG10375-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720