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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10383-RA through 18771 annotations produced 1 hits



(CG10383):

Annotation Number : CG10383
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032699
Gbrowse : chr2L:18690901-18695422 (-) // 100.0 //
Probeset : 1629398_at
Accessions : protein= NP_609896;, nucleotide= NM_136052;
Pathway : 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation
Interpro : "0005488 // binding // inferred from electronic annotation /// 0016788 // hydrolase activity
FlyMine data for FBgn0032699.
VDRC has 2 RNAi stocks for FBgn0032699 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 ± 34 of 4 0.50Down
Head104 ± 84 of 4 0.60Down
Eye67 ± 54 of 4 0.37Down
Thoracicoabdominal ganglion87 ± 44 of 4 0.50Down
Salivary gland278 ± 334 of 4 1.54None
Crop143 ± 44 of 4 0.80None
Midgut129 ± 164 of 4 0.70None
Tubule295 ± 754 of 4 1.60None
Hindgut228 ± 64 of 4 1.30None
Heart156 ± 274 of 4 0.86None
Fat body119 ± 494 of 4 0.66None
Ovary200 ± 54 of 4 1.10None
Testis526 ± 34 of 4 2.90Up
Male accessory glands221 ± 374 of 4 1.20None
Virgin spermatheca150 ± 214 of 4 0.83None
Mated spermatheca49 ± 64 of 4 0.27Down
Adult carcass200 ± 94 of 4 1.10None
Larval CNS66 ± 44 of 4 0.37Down
Larval Salivary gland60 ± 44 of 4 0.34Down
Larval midgut115 ± 94 of 4 0.64Down
Larval tubule63 ± 64 of 4 0.40Down
Larval hindgut123 ± 104 of 4 0.68Down
Larval fat body72 ± 224 of 4 0.40Down
Larval trachea82 ± 64 of 4 0.46Down
Larval carcass87 ± 104 of 4 0.48Down
S2 cells (growing)555 ± 64 of 4 3.07Up
Whole fly180 ± 174 of 4

Looking for CG10383-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime