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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10396-RA through 18771 annotations produced 1 hits



Cytochrome c oxidase Subunit IV (CG10396):

Annotation Number : CG10396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033020
Gbrowse : chr2R:1241498-1242231 (+) // 100.0 //
Probeset : 1624628_at
Accessions : protein= NP_610168;, nucleotide= NM_136324;
Pathway : cytochrome c to oxygen // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferre
Interpro : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005751 // mitochondrial respiratory cha
FlyMine data for FBgn0033020.
BDGP gene expression has embryonic in situ data for CG10396: 4 pix of staining in 1 body parts.
BioGrid reports that CG10396 interacts with CG11163 CG30089 .
VDRC has 2 RNAi stocks for FBgn0033020 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 13 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion9 ± 00 of 4 0.00Down
Salivary gland13 ± 20 of 4 0.05Down
Crop7 ± 20 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule7 ± 10 of 4 0.00Down
Hindgut5 ± 10 of 4 0.00Down
Heart2 ± 00 of 4 0.01Down
Fat body5 ± 50 of 4 0.02Down
Ovary3 ± 10 of 4 0.00Down
Testis2066 ± 754 of 4 8.30Up
Male accessory glands8 ± 20 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca5 ± 20 of 4 0.02Down
Adult carcass15 ± 51 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.02Down
Larval Salivary gland2 ± 00 of 4 0.01Down
Larval midgut7 ± 10 of 4 0.03Down
Larval tubule12 ± 03 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.02Down
Larval fat body321 ± 1584 of 4 1.30None
Larval trachea15 ± 241 of 4 0.06Down
Larval carcass3 ± 10 of 4 0.01Down
S2 cells (growing)4 ± 10 of 4 0.02Down
Whole fly248 ± 104 of 4

Looking for CG10396-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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