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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10407-RA through 18771 annotations produced 1 hits



(CG10407):

Annotation Number : CG10407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038395
Gbrowse : chr3R:11870510-11871693 (-) // 100.0 //
Probeset : 1623852_at
Accessions : protein= NP_650519;, nucleotide= NM_142262;
FlyMine data for FBgn0038395.
BioGrid reports that CG10407 interacts with CG6569 .
VDRC has 2 RNAi stocks for FBgn0038395 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 14 of 4 0.00Down
Head32 14 of 4 0.00Down
Eye224 294 of 4 0.21Down
Thoracicoabdominal ganglion13 14 of 4 0.00Down
Salivary gland42 44 of 4 0.04Down
Crop37 24 of 4 0.00Down
Midgut24 33 of 4 0.00Down
Tubule37 24 of 4 0.00Down
Hindgut48 24 of 4 0.00Down
Heart28 14 of 4 0.03Down
Fat body27 34 of 4 0.03Down
Ovary693 1034 of 4 0.60Down
Testis3180 2094 of 4 2.90Up
Male accessory glands93 474 of 4 0.10Down
Virgin spermatheca35 24 of 4 0.03Down
Mated spermatheca39 14 of 4 0.04Down
Adult carcass43 74 of 4 0.00Down
Larval CNS41 24 of 4 0.04Down
Larval Salivary gland28 24 of 4 0.03Down
Larval midgut33 24 of 4 0.03Down
Larval tubule32 24 of 4 0.00Down
Larval hindgut37 24 of 4 0.03Down
Larval fat body25 63 of 4 0.00Down
Larval trachea73 174 of 4 0.07Down
Larval carcass55 44 of 4 0.05Down
S2 cells (growing)98 44 of 4 0.09Down
Whole fly1081 1174 of 4

Looking for CG10407-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime