Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1041-RA through 18771 annotations produced 1 hits



(CG1041):

Annotation Number : CG1041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037440
Gbrowse : chr3R:2196754-2199747 (-) // 100.0 //
Probeset : 1624185_at
Accessions : protein= NP_001036684; /// NP_649650;, nucleotide= NM_001043219; /// NM_141393;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005777 // peroxisome // inferred from s
Interpro : 0004092 // carnitine O-acetyltransferase activity // inferred from sequence or structural similarity /// 0004092 // carn
FlyMine data for FBgn0037440.
Homophila reports that CG1041 is a close match (2e-52) to human gene CPT2 (NP_000089), a gene associated with CPT deficiency, hepatic, type II, 600649 (3);CPT II deficiency, lethal neonatal, 608836 (3);Myopathy due to CPT II deficiency, 255110 (3).
BioGrid reports that CG1041 interacts with CG14815 CG1841 CG3371 CG5649 CG11138 CG14534 CG4168 CG7200 CG7583 .
VDRC has 1 RNAi stocks for FBgn0037440 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 24 of 4 0.50Down
Head203 ± 194 of 4 1.60Up
Eye99 ± 44 of 4 0.77Down
Thoracicoabdominal ganglion75 ± 24 of 4 0.60Down
Salivary gland1145 ± 344 of 4 8.81Up
Crop176 ± 74 of 4 1.40Up
Midgut367 ± 64 of 4 2.80Up
Tubule173 ± 84 of 4 1.30Up
Hindgut234 ± 64 of 4 1.80Up
Heart198 ± 54 of 4 1.52Up
Fat body267 ± 414 of 4 2.06Up
Ovary93 ± 44 of 4 0.70Down
Testis27 ± 12 of 4 0.20Down
Male accessory glands563 ± 264 of 4 4.30Up
Virgin spermatheca250 ± 124 of 4 1.93Up
Mated spermatheca209 ± 84 of 4 1.61Up
Adult carcass210 ± 54 of 4 1.60Up
Larval CNS94 ± 64 of 4 0.72Down
Larval Salivary gland983 ± 224 of 4 7.57Up
Larval midgut616 ± 274 of 4 4.74Up
Larval tubule158 ± 64 of 4 1.20Up
Larval hindgut277 ± 24 of 4 2.14Up
Larval fat body315 ± 474 of 4 2.40Up
Larval trachea195 ± 254 of 4 1.51Up
Larval carcass474 ± 644 of 4 3.65Up
S2 cells (growing)75 ± 44 of 4 0.58Down
Whole fly130 ± 54 of 4

Looking for CG1041-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime