Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10418-RA through 18771 annotations produced 1 hits



(CG10418):

Annotation Number : CG10418
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036277
Gbrowse : chr3L:12329775-12330338 (+) // 100.0 //
Probeset : 1638070_at
Accessions : protein= NP_648570;, nucleotide= NM_140313;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0036277.
BioGrid reports that CG10418 interacts with CG2021 CG3924 CG4279 CG30092 .
TRiP has 1 RNAi stocks for FBgn0036277 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036277 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain199 ± 84 of 4 0.80None
Head182 ± 104 of 4 0.80None
Eye174 ± 64 of 4 0.74Down
Thoracicoabdominal ganglion194 ± 74 of 4 0.80None
Salivary gland205 ± 24 of 4 0.87None
Crop139 ± 44 of 4 0.60Down
Midgut141 ± 44 of 4 0.60Down
Tubule77 ± 54 of 4 0.30Down
Hindgut115 ± 44 of 4 0.50Down
Heart96 ± 84 of 4 0.41Down
Fat body113 ± 84 of 4 0.48Down
Ovary383 ± 44 of 4 1.60Up
Testis187 ± 34 of 4 0.80None
Male accessory glands336 ± 134 of 4 1.40Up
Virgin spermatheca179 ± 94 of 4 0.76Down
Mated spermatheca222 ± 124 of 4 0.94None
Adult carcass102 ± 24 of 4 0.40Down
Larval CNS616 ± 144 of 4 2.61Up
Larval Salivary gland430 ± 284 of 4 1.82Up
Larval midgut86 ± 54 of 4 0.37Down
Larval tubule108 ± 54 of 4 0.50Down
Larval hindgut130 ± 74 of 4 0.55Down
Larval fat body124 ± 74 of 4 0.50Down
Larval trachea352 ± 274 of 4 1.49Up
Larval carcass183 ± 124 of 4 0.78None
S2 cells (growing)368 ± 74 of 4 1.56Up
Whole fly236 ± 184 of 4

Looking for CG10418-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime