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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10419-RA through 18771 annotations produced 1 hits

Gemin2 (Gem2):

Annotation Number : CG10419
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036850
Gbrowse : chr3L:19092222-19093434 (-) // 99.66 //
Probeset : 1639378_at
Accessions : protein= NP_649092;, nucleotide= NM_140835;
Pathway : via spliceosome // inferred from electronic annotation"
Interpro : 0071254 // cytoplasmic U snRNP body // inferred from direct assay
FlyMine data for FBgn0036850.
BioGrid reports that CG10419 interacts with CG16725 CG8556 CG7231 .
TRiP has 1 RNAi stocks for FBgn0036850 available for purchase.
VDRC has 5 RNAi stocks for FBgn0036850 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 24 of 4 0.70Down
Head44 54 of 4 0.40Down
Eye40 14 of 4 0.36Down
Thoracicoabdominal ganglion66 24 of 4 0.60Down
Salivary gland63 64 of 4 0.57Down
Crop54 34 of 4 0.50Down
Midgut50 34 of 4 0.50Down
Tubule21 13 of 4 0.20Down
Hindgut58 34 of 4 0.50Down
Heart28 24 of 4 0.25Down
Fat body29 14 of 4 0.26Down
Ovary189 54 of 4 1.70Up
Testis153 94 of 4 1.40Up
Male accessory glands66 24 of 4 0.60Down
Virgin spermatheca32 24 of 4 0.29Down
Mated spermatheca39 44 of 4 0.35Down
Adult carcass41 34 of 4 0.40Down
Larval CNS141 64 of 4 1.26Up
Larval Salivary gland66 24 of 4 0.59Down
Larval midgut41 24 of 4 0.37Down
Larval tubule65 04 of 4 0.60Down
Larval hindgut72 24 of 4 0.65Down
Larval fat body67 133 of 4 0.60Down
Larval trachea77 74 of 4 0.70Down
Larval carcass50 44 of 4 0.45Down
S2 cells (growing)121 54 of 4 1.08None
Whole fly112 24 of 4

Looking for CG10419-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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