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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10422-RA through 18771 annotations produced 1 hits



bag-of-marbles (bam):

Annotation Number : CG10422
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000158
Gbrowse : chr3R:21068760-21070884 (-) // 100.0 //
Probeset : 1634336_at
Accessions : protein= NP_476800;, nucleotide= NM_057452;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0045169 //
Interpro : "0000900 // translation repressor activity
FlyMine data for FBgn0000158.
BioGrid reports that CG10422 interacts with CG5940 CG12218 CG30170 CG30170 CG30170 .
TRiP has 1 RNAi stocks for FBgn0000158 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland10 ± 30 of 4 0.20Down
Crop6 ± 12 of 4 0.10Down
Midgut7 ± 12 of 4 0.10Down
Tubule2 ± 00 of 4 0.00Down
Hindgut7 ± 20 of 4 0.10Down
Heart2 ± 11 of 4 0.05Down
Fat body3 ± 20 of 4 0.06Down
Ovary180 ± 104 of 4 3.50Up
Testis26 ± 14 of 4 0.50Down
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.06Down
Mated spermatheca2 ± 00 of 4 0.04Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS16 ± 24 of 4 0.31Down
Larval Salivary gland1 ± 10 of 4 0.04Down
Larval midgut0 ± 00 of 4 0.01Down
Larval tubule1 ± 10 of 4 0.00Down
Larval hindgut22 ± 14 of 4 0.43Down
Larval fat body17 ± 23 of 4 0.30Down
Larval trachea16 ± 54 of 4 0.33Down
Larval carcass69 ± 54 of 4 1.33Up
S2 cells (growing)5 ± 02 of 4 0.10Down
Whole fly51 ± 44 of 4

Looking for CG10422-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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