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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10431-RA through 18771 annotations produced 1 hits



(CG10431):

Annotation Number : CG10431
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032730
Gbrowse : chr2L:18974971-18977122 (+) // 100.0 //
Probeset : 1629439_at
Accessions : protein= NP_609924;, nucleotide= NM_136080;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0032730.
TRiP has 1 RNAi stocks for FBgn0032730 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032730 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 23 of 4 1.00None
Head9 11 of 4 0.60None
Eye3 10 of 4 0.23Down
Thoracicoabdominal ganglion12 11 of 4 0.80None
Salivary gland14 20 of 4 0.93None
Crop9 20 of 4 0.60None
Midgut6 10 of 4 0.40Down
Tubule4 00 of 4 0.30Down
Hindgut8 10 of 4 0.60None
Heart4 10 of 4 0.30Down
Fat body5 20 of 4 0.32Down
Ovary25 34 of 4 1.60None
Testis38 14 of 4 2.40Up
Male accessory glands12 31 of 4 0.80None
Virgin spermatheca8 20 of 4 0.54None
Mated spermatheca2 00 of 4 0.13Down
Adult carcass7 10 of 4 0.50None
Larval CNS14 33 of 4 0.91None
Larval Salivary gland7 20 of 4 0.48None
Larval midgut4 00 of 4 0.25Down
Larval tubule15 00 of 4 1.00None
Larval hindgut7 00 of 4 0.44Down
Larval fat body15 51 of 4 1.00None
Larval trachea5 31 of 4 0.32Down
Larval carcass5 20 of 4 0.32Down
S2 cells (growing)11 11 of 4 0.73None
Whole fly15 22 of 4

Looking for CG10431-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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