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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10436-RA through 18771 annotations produced 1 hits



Pheromone-binding protein-related protein 1 (Pbprp1):

Annotation Number : CG10436
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011279
Gbrowse : chr3L:12389270-12390057 (+) // 100.0 //
Probeset : 1627385_at
Accessions : protein= NP_524039;, nucleotide= NM_079315;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005549 // odorant binding // inferred from electronic annotation /// 0005549 // odorant binding // not recorded /// 000
FlyMine data for FBgn0011279.
BioGrid reports that CG10436 interacts with CG32016 .
VDRC has 1 RNAi stocks for FBgn0011279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 13 of 4 0.10Down
Head1845 ± 494 of 414.00Up
Eye316 ± 1444 of 4 2.40None
Thoracicoabdominal ganglion11 ± 14 of 4 0.10Down
Salivary gland8 ± 30 of 4 0.06Down
Crop43 ± 74 of 4 0.30Down
Midgut4 ± 00 of 4 0.00Down
Tubule8 ± 11 of 4 0.10Down
Hindgut8 ± 02 of 4 0.10Down
Heart4 ± 00 of 4 0.04Down
Fat body17 ± 94 of 4 0.13Down
Ovary2 ± 00 of 4 0.00Down
Testis39 ± 24 of 4 0.30Down
Male accessory glands8 ± 10 of 4 0.10Down
Virgin spermatheca14 ± 14 of 4 0.11Down
Mated spermatheca17 ± 43 of 4 0.13Down
Adult carcass6 ± 20 of 4 0.00Down
Larval CNS13 ± 44 of 4 0.10Down
Larval Salivary gland7 ± 11 of 4 0.05Down
Larval midgut3 ± 10 of 4 0.03Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut7 ± 10 of 4 0.06Down
Larval fat body9 ± 20 of 4 0.10Down
Larval trachea8 ± 81 of 4 0.06Down
Larval carcass4 ± 00 of 4 0.03Down
S2 cells (growing)2 ± 00 of 4 0.02Down
Whole fly132 ± 124 of 4

Looking for CG10436-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime