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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10440-RA through 18771 annotations produced 1 hits



(CG10440):

Annotation Number : CG10440
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034636
Gbrowse : chr2R:17447750-17458957 (-) // 100.0 //
Probeset : 1626470_at
Accessions : protein= NP_611588;, nucleotide= NM_137744;
Pathway : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inf
Interpro : 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein bindin
FlyMine data for FBgn0034636.
BDGP gene expression has embryonic in situ data for CG10440: 25 pix of staining in 11 body parts.
Homophila reports that CG10440 is a close match (7e-12) to human gene EPM3;KCTD7 (NP_694578), a gene associated with Epilepsy, progressive myoclonic 3, 611726 (3).
BioGrid reports that CG10440 interacts with CG10440 CG7807 CG3018 CG32354 .
TRiP has 1 RNAi stocks for FBgn0034636 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034636 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain258 34 of 427.90Up
Head47 24 of 4 5.20Up
Eye11 04 of 4 1.28None
Thoracicoabdominal ganglion128 34 of 413.80Up
Salivary gland6 30 of 4 0.70None
Crop8 10 of 4 0.90None
Midgut5 22 of 4 0.50None
Tubule2 00 of 4 0.30Down
Hindgut6 00 of 4 0.70None
Heart39 34 of 4 4.31Up
Fat body4 20 of 4 0.51Down
Ovary1 00 of 4 0.20Down
Testis4 01 of 4 0.50Down
Male accessory glands38 44 of 4 4.20Up
Virgin spermatheca4 10 of 4 0.46Down
Mated spermatheca6 00 of 4 0.74None
Adult carcass3 10 of 4 0.30Down
Larval CNS151 134 of 416.39Up
Larval Salivary gland2 10 of 4 0.22Down
Larval midgut6 10 of 4 0.68None
Larval tubule16 14 of 4 1.80Up
Larval hindgut5 10 of 4 0.61None
Larval fat body1 00 of 4 0.10Down
Larval trachea4 21 of 4 0.51None
Larval carcass23 22 of 4 2.51Up
S2 cells (growing)2 00 of 4 0.30Down
Whole fly9 14 of 4

Looking for CG10440-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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