FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10444-RA through 18771 annotations produced 1 hits

(CG10444):

Annotation Number : CG10444
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034494
Gbrowse : chr2R:16159155-16162030 (-) // 100.0 //
Probeset : 1629271_at
Accessions : protein= NP_611465;, nucleotide= NM_137621;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008523 // sodium-dependent multivitamin tran
FlyMine data for FBgn0034494.
BDGP gene expression has embryonic in situ data for CG10444: 4 pix of staining in 1 body parts.
Homophila reports that CG10444 is a close match (2e-85) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
VDRC has 2 RNAi stocks for FBgn0034494 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	417 ± 2	4 of 4	1.80	Up
Head	392 ± 36	4 of 4	1.70	Up
Eye	434 ± 37	4 of 4	1.89	Up
Thoracicoabdominal ganglion	339 ± 8	4 of 4	1.50	Up
Salivary gland	41 ± 3	4 of 4	0.18	Down
Crop	517 ± 11	4 of 4	2.20	Up
Midgut	147 ± 10	4 of 4	0.60	Down
Tubule	60 ± 4	4 of 4	0.30	Down
Hindgut	187 ± 8	4 of 4	0.80	Down
Heart	311 ± 30	4 of 4	1.35	None
Fat body	546 ± 41	4 of 4	2.38	Up
Ovary	480 ± 3	4 of 4	2.10	Up
Testis	159 ± 5	4 of 4	0.70	Down
Male accessory glands	35 ± 4	4 of 4	0.20	Down
Virgin spermatheca	330 ± 26	4 of 4	1.44	Up
Mated spermatheca	311 ± 18	4 of 4	1.36	Up
Adult carcass	219 ± 7	4 of 4	1.00	None
Larval CNS	431 ± 57	4 of 4	1.88	Up
Larval Salivary gland	45 ± 4	4 of 4	0.20	Down
Larval midgut	248 ± 26	4 of 4	1.08	None
Larval tubule	37 ± 2	4 of 4	0.20	Down
Larval hindgut	257 ± 7	4 of 4	1.12	None
Larval fat body	995 ± 121	4 of 4	4.30	Up
Larval trachea	117 ± 14	4 of 4	0.51	Down
Larval carcass	635 ± 181	4 of 4	2.76	None
S2 cells (growing)	1164 ± 27	4 of 4	5.06	Up
Whole fly	229 ± 10	4 of 4

Looking for CG10444-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720