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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10445-RA through 18771 annotations produced 1 hits



(CG10445):

Annotation Number : CG10445
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037531
Gbrowse : chr3R:3742649-3745776 (-) // 100.0 //
Probeset : 1631735_at
Accessions : protein= NP_001163542; /// NP_649751;, nucleotide= NM_001170071; /// NM_141494;
Pathway : via spliceosome // inferred from mutant phenotype"
Interpro : 0005634 // nucleus // inferred by curator
FlyMine data for FBgn0037531.
Homophila reports that CG10445 is a close match (5e-11) to human gene HARP;SIOD;SMARCAL1 (NP_054859), a gene associated with Schimke immunoosseous dysplasia, 242900 (3).
VDRC has 1 RNAi stocks for FBgn0037531 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head6 00 of 4 0.20Down
Eye6 01 of 4 0.23Down
Thoracicoabdominal ganglion7 02 of 4 0.30Down
Salivary gland16 21 of 4 0.59Down
Crop12 23 of 4 0.40Down
Midgut11 00 of 4 0.40Down
Tubule11 11 of 4 0.40Down
Hindgut14 04 of 4 0.50Down
Heart5 00 of 4 0.19Down
Fat body8 10 of 4 0.30Down
Ovary112 104 of 4 3.90Up
Testis11 04 of 4 0.40Down
Male accessory glands9 21 of 4 0.30Down
Virgin spermatheca3 10 of 4 0.13Down
Mated spermatheca6 00 of 4 0.23Down
Adult carcass8 30 of 4 0.30Down
Larval CNS15 24 of 4 0.53Down
Larval Salivary gland10 20 of 4 0.37Down
Larval midgut11 00 of 4 0.39Down
Larval tubule16 04 of 4 0.60Down
Larval hindgut13 04 of 4 0.47Down
Larval fat body10 21 of 4 0.40Down
Larval trachea12 42 of 4 0.45Down
Larval carcass7 00 of 4 0.26Down
S2 cells (growing)39 34 of 4 1.36None
Whole fly28 14 of 4

Looking for CG10445-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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