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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10449-RA through 18771 annotations produced 1 hits



Catecholamines up (Catsup):

Annotation Number : CG10449
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002022
Gbrowse : chr2L:19041713-19043614 (+) // 100.0 //
Probeset : 1627458_at
Accessions : protein= NP_524931;, nucleotide= NM_080192;
Pathway : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0030234 // enzyme regulator activity // inferred fr
FlyMine data for FBgn0002022.
BDGP gene expression has embryonic in situ data for Catsup: 13 pix of staining in 18 body parts.
Homophila reports that CG10449 is a close match (1e-12) to human gene SLC39A4;ZIP4 (NP_570901), a gene associated with Acrodermatitis enteropathica, 201100 (3).
BioGrid reports that CG10449 interacts with CG9911 CG16985 CG31006 .
VDRC has 2 RNAi stocks for FBgn0002022 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain177 24 of 4 0.50Down
Head385 144 of 4 1.20None
Eye424 164 of 4 1.27Up
Thoracicoabdominal ganglion218 74 of 4 0.70Down
Salivary gland1424 164 of 4 4.26Up
Crop418 144 of 4 1.30Up
Midgut587 164 of 4 1.80Up
Tubule677 64 of 4 2.00Up
Hindgut454 224 of 4 1.40Up
Heart434 194 of 4 1.30Up
Fat body429 364 of 4 1.29Up
Ovary288 24 of 4 0.90None
Testis293 54 of 4 0.90None
Male accessory glands1576 604 of 4 4.70Up
Virgin spermatheca662 74 of 4 1.98Up
Mated spermatheca736 444 of 4 2.21Up
Adult carcass400 84 of 4 1.20Up
Larval CNS306 234 of 4 0.92None
Larval Salivary gland2077 1244 of 4 6.22Up
Larval midgut386 94 of 4 1.16None
Larval tubule805 134 of 4 2.40Up
Larval hindgut406 134 of 4 1.22Up
Larval fat body1097 1044 of 4 3.30Up
Larval trachea629 374 of 4 1.88Up
Larval carcass497 264 of 4 1.49Up
S2 cells (growing)1144 84 of 4 3.43Up
Whole fly334 174 of 4

Looking for CG10449-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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