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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1046-RA through 18771 annotations produced 1 hits



chr3R:2578585-2579921 (-) // 100.0 // (zerknult):

Annotation Number : CG1046
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1637961_at
Accessions : protein= , nucleotide= NP_001138018; /// NP_476793;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for full length.
Homophila reports that CG1046 is a close match (8e-11) to human gene HOXA13;HOX1J (NP_000513), a gene associated with Guttmacher syndrome, 176305 (3);Hand-foot-uterus syndrome, 140000 (3).
BioGrid reports that CG1046 interacts with CG12399 CG4325 CG13510 CG13838 CG14044 CG15634 CG2262 CG32096 CG32584 CG6477 CG8609 CG9527 Dmel CG34365 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 1.00None
Head3 10 of 4 0.70None
Eye3 00 of 4 0.73None
Thoracicoabdominal ganglion2 10 of 4 0.50None
Salivary gland4 10 of 4 1.12None
Crop4 00 of 4 1.00None
Midgut2 00 of 4 0.50None
Tubule3 00 of 4 0.80Down
Hindgut1 00 of 4 0.30None
Heart2 10 of 4 0.60None
Fat body6 40 of 4 1.42None
Ovary10 10 of 4 2.40Up
Testis1 00 of 4 0.30None
Male accessory glands3 10 of 4 0.80None
Virgin spermatheca1 00 of 4 0.39None
Mated spermatheca4 10 of 4 1.06None
Adult carcass6 10 of 4 1.60None
Larval CNS3 20 of 4 0.78None
Larval Salivary gland2 00 of 4 0.62None
Larval midgut1 00 of 4 0.38None
Larval tubule2 10 of 4 0.60None
Larval hindgut1 00 of 4 0.23None
Larval fat body2 00 of 4 0.50None
Larval trachea3 20 of 4 0.76None
Larval carcass2 00 of 4 0.51None
S2 cells (growing)2 00 of 4 0.51None
Whole fly4 10 of 4

Looking for CG1046-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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