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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10460-RA through 18771 annotations produced 1 hits

crammer (cer):

Annotation Number : CG10460
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034443
Gbrowse : chr2R:15283716-15284265 (-) // 100.0 //
Probeset : 1632390_at
Accessions : protein= NP_611420;, nucleotide= NM_137576;
Interpro : 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from direct assay /// 0008234 // cysteine-type pep
FlyMine data for FBgn0034443.
BioGrid reports that CG10460 interacts with CG10992 CG3074 CG6337 CG17158 .
TRiP has 1 RNAi stocks for FBgn0034443 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034443 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain239 114 of 4 0.90Down
Head515 404 of 4 1.90Up
Eye172 204 of 4 0.62Down
Thoracicoabdominal ganglion215 84 of 4 0.80Down
Salivary gland595 1254 of 4 2.16None
Crop753 374 of 4 2.70Up
Midgut140 84 of 4 0.50Down
Tubule248 164 of 4 0.90None
Hindgut911 104 of 4 3.30Up
Heart755 694 of 4 2.73Up
Fat body899 784 of 4 3.26Up
Ovary295 224 of 4 1.10None
Testis101 44 of 4 0.40Down
Male accessory glands692 784 of 4 2.50Up
Virgin spermatheca365 194 of 4 1.32Up
Mated spermatheca379 364 of 4 1.37None
Adult carcass575 284 of 4 2.10Up
Larval CNS335 154 of 4 1.21Up
Larval Salivary gland1171 1334 of 4 4.24Up
Larval midgut226 584 of 4 0.82None
Larval tubule4656 2144 of 416.90Up
Larval hindgut1138 734 of 4 4.12Up
Larval fat body4900 8284 of 417.70Up
Larval trachea1178 1704 of 4 4.27Up
Larval carcass2313 2444 of 4 8.38Up
S2 cells (growing)624 204 of 4 2.26Up
Whole fly276 84 of 4

Looking for CG10460-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime