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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10472-RA through 18771 annotations produced 1 hits



(CG10472):

Annotation Number : CG10472
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035670
Gbrowse : chr3L:6054476-6056006 (-) // 100.0 //
Probeset : 1629726_at
Accessions : protein= NP_648017;, nucleotide= NM_139760;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0035670.
Homophila reports that CG10472 is a close match (5e-12) to human gene HP (NP_005134), a gene associated with [Anhaptoglobinemia] (3);[Hypohaptoglobinemia] (3).
BioGrid reports that CG10472 interacts with CG31120 .
VDRC has 2 RNAi stocks for FBgn0035670 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 ± 24 of 4 0.00Down
Head13 ± 02 of 4 0.00Down
Eye14 ± 34 of 4 0.01Down
Thoracicoabdominal ganglion20 ± 04 of 4 0.00Down
Salivary gland16 ± 30 of 4 0.01Down
Crop10 ± 10 of 4 0.00Down
Midgut7328 ± 1104 of 4 3.70Up
Tubule6 ± 00 of 4 0.00Down
Hindgut36 ± 34 of 4 0.00Down
Heart5 ± 21 of 4 0.00Down
Fat body16 ± 53 of 4 0.01Down
Ovary4 ± 00 of 4 0.00Down
Testis5 ± 00 of 4 0.00Down
Male accessory glands15 ± 41 of 4 0.00Down
Virgin spermatheca8 ± 11 of 4 0.00Down
Mated spermatheca11 ± 12 of 4 0.01Down
Adult carcass21 ± 11 of 4 0.00Down
Larval CNS15 ± 44 of 4 0.01Down
Larval Salivary gland9 ± 10 of 4 0.00Down
Larval midgut7539 ± 3804 of 4 3.76Up
Larval tubule12 ± 10 of 4 0.00Down
Larval hindgut9 ± 20 of 4 0.00Down
Larval fat body12 ± 10 of 4 0.00Down
Larval trachea6 ± 20 of 4 0.00Down
Larval carcass9 ± 21 of 4 0.00Down
S2 cells (growing)13 ± 04 of 4 0.01Down
Whole fly2004 ± 2954 of 4

Looking for CG10472-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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