Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10474-RA through 18771 annotations produced 1 hits



(CG10474):

Annotation Number : CG10474
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034427
Gbrowse : chr2R:15173077-15174103 (-) // 100.0 //
Probeset : 1626776_at
Accessions : protein= NP_611404;, nucleotide= NM_137560;
Interpro : 0003948 // N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0034427.
Homophila reports that CG10474 is a close match (5e-75) to human gene AGA (NP_000018), a gene associated with Aspartylglucosaminuria (3).
VDRC has 2 RNAi stocks for FBgn0034427 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.30None
Head4 ± 10 of 4 2.60None
Eye3 ± 00 of 4 2.00None
Thoracicoabdominal ganglion0 ± 00 of 4 0.50None
Salivary gland3 ± 20 of 4 2.25None
Crop3 ± 10 of 4 2.00None
Midgut1 ± 00 of 4 0.80None
Tubule2 ± 00 of 4 1.20Up
Hindgut1 ± 00 of 4 1.00None
Heart1 ± 00 of 4 1.15None
Fat body3 ± 20 of 4 1.87None
Ovary0 ± 00 of 4 0.30None
Testis0 ± 00 of 4 0.50None
Male accessory glands4 ± 20 of 4 2.40None
Virgin spermatheca5 ± 20 of 4 3.32None
Mated spermatheca3 ± 00 of 4 1.75None
Adult carcass7 ± 10 of 4 4.20Up
Larval CNS1 ± 00 of 4 0.69None
Larval Salivary gland0 ± 00 of 4 0.51None
Larval midgut3 ± 10 of 4 1.78None
Larval tubule0 ± 00 of 4 0.50None
Larval hindgut1 ± 00 of 4 0.59None
Larval fat body0 ± 00 of 4 0.50None
Larval trachea1 ± 10 of 4 0.94None
Larval carcass0 ± 00 of 4 0.56None
S2 cells (growing)1 ± 00 of 4 0.59None
Whole fly1 ± 00 of 4

Looking for CG10474-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime