FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10476-RA through 18771 annotations produced 2 hits

(CG10476):

Annotation Number : CG10476
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034426
Gbrowse : chr2R:15175487-15176150 (+) // 97.01 // /// chr2R:15172055-15172724 (-) // 100.0 //
Probeset : 1637907_at
Accessions : protein= NP_611403;, nucleotide= NM_137559;
FlyMine data for FBgn0034426.
VDRC has 3 RNAi stocks for FBgn0034426 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	1.00	None
Head	1 ± 0	0 of 4	1.20	None
Eye	0 ± 0	0 of 4	0.91	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.80	None
Salivary gland	1 ± 0	0 of 4	1.94	None
Crop	1 ± 0	0 of 4	1.60	None
Midgut	1 ± 0	0 of 4	1.60	None
Tubule	2 ± 0	0 of 4	3.40	Up
Hindgut	0 ± 0	0 of 4	1.10	None
Heart	3 ± 1	0 of 4	3.94	None
Fat body	0 ± 0	0 of 4	1.06	None
Ovary	0 ± 0	0 of 4	0.50	None
Testis	0 ± 0	0 of 4	0.80	None
Male accessory glands	0 ± 0	0 of 4	0.70	None
Virgin spermatheca	1 ± 0	0 of 4	1.91	None
Mated spermatheca	2 ± 0	0 of 4	2.47	None
Adult carcass	1 ± 0	0 of 4	1.60	None
Larval CNS	0 ± 0	0 of 4	0.97	None
Larval Salivary gland	3 ± 2	0 of 4	4.21	None
Larval midgut	34 ± 6	3 of 4	40.85	Up
Larval tubule	2 ± 0	0 of 4	2.70	Up
Larval hindgut	7 ± 2	0 of 4	8.62	None
Larval fat body	0 ± 0	0 of 4	1.00	None
Larval trachea	6 ± 4	0 of 4	8.18	None
Larval carcass	2 ± 0	0 of 4	2.97	Up
S2 cells (growing)	0 ± 0	0 of 4	0.85	None
Whole fly	0 ± 0	0 of 4

/// (CG10476 /// CG18606):

Annotation Number : CG18606
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034426 /// FBgn0034428
Gbrowse : chr2R:15175526-15176156 (+) // 100.0 // /// chr2R:15171833-15172685 (-) // 97.78 //
Probeset : 1639362_s_at
Accessions : protein= NP_611403; /// NP_611405;, nucleotide= NM_137559; /// NM_137561;
FlyMine data for FBgn0034426 /// FBgn0034428.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.40	None
Head	8 ± 1	0 of 4	1.60	None
Eye	2 ± 1	0 of 4	0.54	None
Thoracicoabdominal ganglion	3 ± 0	0 of 4	0.70	None
Salivary gland	9 ± 5	0 of 4	1.82	None
Crop	5 ± 1	1 of 4	1.10	None
Midgut	9 ± 1	4 of 4	1.80	None
Tubule	5 ± 1	0 of 4	1.10	None
Hindgut	8 ± 0	1 of 4	1.60	None
Heart	1 ± 0	0 of 4	0.33	None
Fat body	14 ± 1	3 of 4	2.77	Up
Ovary	2 ± 0	0 of 4	0.40	None
Testis	4 ± 0	0 of 4	0.80	None
Male accessory glands	6 ± 2	0 of 4	1.30	None
Virgin spermatheca	8 ± 1	0 of 4	1.65	None
Mated spermatheca	9 ± 1	1 of 4	1.91	None
Adult carcass	5 ± 2	0 of 4	1.20	None
Larval CNS	6 ± 1	2 of 4	1.33	None
Larval Salivary gland	5 ± 1	0 of 4	1.05	None
Larval midgut	576 ± 146	4 of 4	111.95	Up
Larval tubule	18 ± 1	4 of 4	3.60	Up
Larval hindgut	35 ± 13	4 of 4	6.83	None
Larval fat body	4 ± 1	0 of 4	0.90	None
Larval trachea	2 ± 1	0 of 4	0.47	None
Larval carcass	3 ± 1	0 of 4	0.75	None
S2 cells (growing)	4 ± 1	0 of 4	0.92	None
Whole fly	5 ± 1	1 of 4

Looking for CG10476-RA. 2 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720