FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10480-RA through 18771 annotations produced 1 hits

"CG18640 (Bj1) ( RCC protein"):

Annotation Number : CG10480
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : chr3L:5923358-5925873 (-) // 100.0 //
Probeset : 1630166_s_at
Accessions : protein= , nucleotide= NP_523943; /// NP_729118; /// NP_729119;
Pathway : 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotati
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for full length.
Homophila reports that CG10480 is a close match (1e-13) to human gene HERC2;SHEP1 (NP_004658), a gene associated with [Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3);[Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3).
BioGrid reports that CG10480 interacts with CG12723 CG1322 CG31999 CG1071 CG11899 CG13005 CG2865 CG9999 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	228 ± 8	4 of 4	0.30	Down
Head	137 ± 8	4 of 4	0.20	Down
Eye	65 ± 4	4 of 4	0.08	Down
Thoracicoabdominal ganglion	206 ± 7	4 of 4	0.30	Down
Salivary gland	127 ± 9	4 of 4	0.16	Down
Crop	101 ± 2	4 of 4	0.10	Down
Midgut	118 ± 5	4 of 4	0.10	Down
Tubule	152 ± 12	4 of 4	0.20	Down
Hindgut	109 ± 5	4 of 4	0.10	Down
Heart	51 ± 4	4 of 4	0.06	Down
Fat body	169 ± 30	4 of 4	0.21	Down
Ovary	1636 ± 29	4 of 4	2.00	Up
Testis	389 ± 13	4 of 4	0.50	Down
Male accessory glands	99 ± 5	4 of 4	0.10	Down
Virgin spermatheca	175 ± 19	4 of 4	0.22	Down
Mated spermatheca	157 ± 8	4 of 4	0.20	Down
Adult carcass	126 ± 9	4 of 4	0.20	Down
Larval CNS	1079 ± 99	4 of 4	1.35	Up
Larval Salivary gland	427 ± 32	4 of 4	0.53	Down
Larval midgut	188 ± 4	4 of 4	0.24	Down
Larval tubule	97 ± 4	4 of 4	0.10	Down
Larval hindgut	308 ± 18	4 of 4	0.38	Down
Larval fat body	102 ± 20	4 of 4	0.10	Down
Larval trachea	312 ± 17	4 of 4	0.39	Down
Larval carcass	430 ± 50	4 of 4	0.54	Down
S2 cells (growing)	446 ± 14	4 of 4	0.56	Down
Whole fly	801 ± 12	4 of 4

Looking for CG10480-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720