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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10486-RA through 18771 annotations produced 1 hits



(CG10486):

Annotation Number : CG10486
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035647
Gbrowse : chr3L:5897477-5899850 (-) // 100.0 //
Probeset : 1624472_at
Accessions : protein= NP_647998;, nucleotide= NM_139741;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0035647.
Homophila reports that CG10486 is a close match (4e-16) to human gene OAT4L;SLC22A12;URAT1 (NP_653186), a gene associated with Hypouricemia, renal, 220150 (3).
BioGrid reports that CG10486 interacts with CG7726 .
VDRC has 3 RNAi stocks for FBgn0035647 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.70None
Head1 ± 00 of 4 0.40None
Eye0 ± 00 of 4 0.21None
Thoracicoabdominal ganglion4 ± 10 of 4 1.30None
Salivary gland4 ± 10 of 4 1.10None
Crop3 ± 10 of 4 1.00None
Midgut2 ± 00 of 4 0.60None
Tubule5 ± 10 of 4 1.40None
Hindgut4 ± 10 of 4 1.20None
Heart0 ± 00 of 4 0.24None
Fat body1 ± 00 of 4 0.49None
Ovary0 ± 00 of 4 0.10None
Testis18 ± 24 of 4 5.10Up
Male accessory glands3 ± 00 of 4 0.90None
Virgin spermatheca1 ± 00 of 4 0.45None
Mated spermatheca3 ± 10 of 4 0.88None
Adult carcass4 ± 10 of 4 1.30None
Larval CNS2 ± 10 of 4 0.78None
Larval Salivary gland7 ± 20 of 4 2.09None
Larval midgut1 ± 00 of 4 0.49None
Larval tubule9 ± 10 of 4 2.50None
Larval hindgut3 ± 20 of 4 0.91None
Larval fat body6 ± 10 of 4 1.80None
Larval trachea1 ± 00 of 4 0.41None
Larval carcass2 ± 00 of 4 0.59None
S2 cells (growing)5 ± 00 of 4 1.38None
Whole fly3 ± 10 of 4

Looking for CG10486-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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