FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10488-RA through 18771 annotations produced 1 hits

eye gone (eyg):

Annotation Number : CG10488
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000625
Gbrowse : chr3L:12456135-12461121 (-) // 99.85 //
Probeset : 1632742_at
Accessions : protein= NP_001014582; /// NP_524042;, nucleotide= NM_001014582; /// NM_079318;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from s
FlyMine data for FBgn0000625.
BDGP gene expression has embryonic in situ data for eyg: 19 pix of staining in 8 body parts.
Homophila reports that CG10488 is a close match (8e-11) to human gene PROP1 (NP_006252), a gene associated with Pituitary hormone deficiency, combined (3).
BioGrid reports that CG10488 interacts with CG1391 CG4216 CG10498 CG10992 CG11324 CG1135 CG12703 CG1422 CG14996 CG1641 CG17666 CG18012 CG3193 CG31973 CG4617 Dmel CG34168 CG5029 CG6660 CG7404 CG8286 CG8569 CG8854 CG9375 CG1464 CG1464 CG1464 CG1464 CG17964 CG31481 CG2621 .
TRiP has 1 RNAi stocks for FBgn0000625 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000625 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.50	None
Head	21 ± 1	2 of 4	3.60	Up
Eye	60 ± 3	4 of 4	10.25	Up
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.30	None
Salivary gland	512 ± 17	4 of 4	87.18	Up
Crop	7 ± 2	0 of 4	1.20	None
Midgut	5 ± 2	0 of 4	0.90	None
Tubule	1 ± 0	0 of 4	0.20	Down
Hindgut	4 ± 1	0 of 4	0.80	None
Heart	1 ± 0	0 of 4	0.24	None
Fat body	10 ± 8	1 of 4	1.70	None
Ovary	1 ± 0	0 of 4	0.30	None
Testis	5 ± 1	0 of 4	0.90	None
Male accessory glands	93 ± 9	4 of 4	16.00	Up
Virgin spermatheca	5 ± 1	0 of 4	0.98	None
Mated spermatheca	9 ± 2	0 of 4	1.60	None
Adult carcass	12 ± 2	0 of 4	2.20	None
Larval CNS	9 ± 5	2 of 4	1.57	None
Larval Salivary gland	216 ± 5	4 of 4	36.84	Up
Larval midgut	3 ± 1	0 of 4	0.58	None
Larval tubule	2 ± 0	0 of 4	0.30	None
Larval hindgut	2 ± 0	0 of 4	0.46	None
Larval fat body	2 ± 0	0 of 4	0.40	None
Larval trachea	2 ± 1	0 of 4	0.39	None
Larval carcass	11 ± 0	1 of 4	1.91	Up
S2 cells (growing)	2 ± 1	0 of 4	0.49	None
Whole fly	5 ± 1	0 of 4

Looking for CG10488-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720