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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10489-RA through 18771 annotations produced 1 hits



Pole2 (Pole2):

Annotation Number : CG10489
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035644
Gbrowse : chr3L:5888784-5890479 (-) // 100.0 //
Probeset : 1630620_at
Accessions : protein= NP_647995;, nucleotide= NM_139738;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0008622 // epsilon DNA polymerase complex // inferred from
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inf
FlyMine data for FBgn0035644.
BioGrid reports that CG10489 interacts with CG11555 CG14089 CG14228 CG4087 CG5094 .
VDRC has 1 RNAi stocks for FBgn0035644 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.00Down
Head15 ± 22 of 4 0.10Down
Eye8 ± 33 of 4 0.06Down
Thoracicoabdominal ganglion9 ± 11 of 4 0.10Down
Salivary gland19 ± 40 of 4 0.13Down
Crop10 ± 10 of 4 0.10Down
Midgut25 ± 14 of 4 0.20Down
Tubule15 ± 21 of 4 0.10Down
Hindgut16 ± 20 of 4 0.10Down
Heart6 ± 10 of 4 0.04Down
Fat body26 ± 84 of 4 0.18Down
Ovary295 ± 94 of 4 2.00Up
Testis91 ± 44 of 4 0.60Down
Male accessory glands8 ± 30 of 4 0.10Down
Virgin spermatheca12 ± 10 of 4 0.09Down
Mated spermatheca14 ± 21 of 4 0.10Down
Adult carcass24 ± 30 of 4 0.20Down
Larval CNS128 ± 114 of 4 0.88None
Larval Salivary gland70 ± 24 of 4 0.48Down
Larval midgut27 ± 04 of 4 0.18Down
Larval tubule21 ± 10 of 4 0.10Down
Larval hindgut40 ± 14 of 4 0.28Down
Larval fat body27 ± 12 of 4 0.20Down
Larval trachea75 ± 114 of 4 0.51Down
Larval carcass52 ± 24 of 4 0.36Down
S2 cells (growing)124 ± 54 of 4 0.85Down
Whole fly146 ± 64 of 4

Looking for CG10489-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime