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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10498-RA through 18771 annotations produced 1 hits



cyclin E-CDK2 (cdc2c):

Annotation Number : CG10498
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004107
Gbrowse : chr3R:16561341-16563054 (+) // 100.0 //
Probeset : 1640394_s_at
Accessions : protein= NP_001163666; /// NP_524420; /// NP_732544;, nucleotide= NM_001170195; /// NM_079696; /// NM_169916;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0004107.
BDGP gene expression has embryonic in situ data for cdc2c: 26 pix of staining in 13 body parts.
Homophila reports that CG10498 is a close match (6e-12) to human gene FLJ14813;THC2 (NP_116233), a gene associated with Thrombocytopenia-2, 188000 (3).
BioGrid reports that CG10498 interacts with CG12559 CG1954 CG2903 CG3938 CG3938 CG3938 CG3938 CG9790 CG13625 CG15043 CG15676 CG11182 CG1772 CG7281 CG5650 CG7405 CG11525 CG5731 CG15218 CG10308 CG11963 CG14937 CG14317 CG8667 CG14619 CG11186 CG2189 CG6191 CG1765 CG14119 CG9046 CG2948 CG17508 CG5708 CG2944 CG14816 CG32045 CG5072 CG7948 CG4184 CG5643 CG6293 CG18011 CG10600 CG3850 CG17706 CG4257 Dmel CG14425 .
TRiP has 6 RNAi stocks for FBgn0004107 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004107 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 ± 04 of 4 0.30Down
Head23 ± 24 of 4 0.10Down
Eye14 ± 13 of 4 0.08Down
Thoracicoabdominal ganglion35 ± 14 of 4 0.20Down
Salivary gland20 ± 73 of 4 0.11Down
Crop13 ± 21 of 4 0.10Down
Midgut21 ± 11 of 4 0.10Down
Tubule24 ± 44 of 4 0.10Down
Hindgut12 ± 02 of 4 0.10Down
Heart6 ± 10 of 4 0.03Down
Fat body17 ± 53 of 4 0.09Down
Ovary443 ± 54 of 4 2.40Up
Testis24 ± 14 of 4 0.10Down
Male accessory glands16 ± 21 of 4 0.10Down
Virgin spermatheca14 ± 13 of 4 0.08Down
Mated spermatheca17 ± 34 of 4 0.09Down
Adult carcass27 ± 52 of 4 0.10Down
Larval CNS192 ± 74 of 4 1.04None
Larval Salivary gland119 ± 44 of 4 0.64Down
Larval midgut21 ± 31 of 4 0.12Down
Larval tubule19 ± 23 of 4 0.10Down
Larval hindgut29 ± 14 of 4 0.16Down
Larval fat body18 ± 11 of 4 0.10Down
Larval trachea76 ± 144 of 4 0.41Down
Larval carcass59 ± 44 of 4 0.32Down
S2 cells (growing)80 ± 14 of 4 0.44Down
Whole fly185 ± 154 of 4

Looking for CG10498-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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