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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10508-RE through 18771 annotations produced 1 hits



(CG10508):

Annotation Number : CG10508
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037060
Gbrowse : chr3L:21203338-21209154 (+) // 100.0 //
Probeset : 1623133_a_at
Accessions : protein= NP_001137994; /// NP_788560; /// NP_788562; /// NP_996134;, nucleotide= NM_001144522; /// NM_176382; /// NM_176384; /// NM_206412;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0037060.
BioGrid reports that CG10508 interacts with CG16721 CG5939 CG1455 CG14840 CG3151 CG3938 CG4394 CG4755 CG4767 CG9213 CG9426 CG9842 .
VDRC has 2 RNAi stocks for FBgn0037060 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain724 ± 174 of 417.80Up
Head196 ± 104 of 4 4.80Up
Eye256 ± 184 of 4 6.30Up
Thoracicoabdominal ganglion560 ± 84 of 413.80Up
Salivary gland31 ± 63 of 4 0.77None
Crop19 ± 14 of 4 0.50Down
Midgut6 ± 10 of 4 0.20Down
Tubule9 ± 12 of 4 0.20Down
Hindgut21 ± 04 of 4 0.50Down
Heart32 ± 14 of 4 0.80None
Fat body50 ± 334 of 4 1.24None
Ovary2 ± 00 of 4 0.10Down
Testis249 ± 224 of 4 6.10Up
Male accessory glands17 ± 03 of 4 0.40Down
Virgin spermatheca57 ± 44 of 4 1.42Up
Mated spermatheca62 ± 174 of 4 1.54None
Adult carcass50 ± 44 of 4 1.20None
Larval CNS306 ± 64 of 4 7.53Up
Larval Salivary gland8 ± 11 of 4 0.20Down
Larval midgut5 ± 21 of 4 0.14Down
Larval tubule23 ± 24 of 4 0.60Down
Larval hindgut15 ± 24 of 4 0.37Down
Larval fat body30 ± 54 of 4 0.80None
Larval trachea5 ± 51 of 4 0.14Down
Larval carcass9 ± 04 of 4 0.23Down
S2 cells (growing)3 ± 00 of 4 0.09Down
Whole fly40 ± 34 of 4

Looking for CG10508-RE. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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